BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0025.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781467.1| sensory transduction protein kinase [Clostridiu... 99 3e-20 ref|NP_943488.1| SilS [Klebsiella pneumoniae] >gi|38016817|gb|AA... 92 3e-18 ref|NP_941212.1| probable sensor kinase (silver resistance) [Ser... 92 3e-18 ref|ZP_00128496.1| COG0642: Signal transduction histidine kinase... 92 4e-18 gb|EAK70999.1| unknown [environmental sequence] 92 4e-18 >ref|NP_781467.1| sensory transduction protein kinase [Clostridium tetani E88] gb|AAO35404.1| sensory transduction protein kinase [Clostridium tetani E88] Length = 521 Score = 99.0 bits (245), Expect = 3e-20, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 89/145 (61%), Gaps = 3/145 (2%) Query: 1 LGEMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPG 60 L E++ QL+ E P+ EN+++++ N+ + + + D D + R +NL +NA+++S KPG Sbjct: 374 LDELIEQLVEEFIPVFLENKIEIKRNIESN-IKIDADGDKLVRVFENLFMNAVRYSYKPG 432 Query: 61 VIQVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIAR 120 +I+++L + A+ + N G + +++ +LF+RFYR S+S G GLGL+I++ Sbjct: 433 LIKINLINEYGYAKFSITNKGKSLRKDEVDKLFDRFYRVEKSRS--ETTGGTGLGLAISK 490 Query: 121 SIANLHHGELECEHSGGHFTFQLSL 145 SI +LHHGE+ G TF + L Sbjct: 491 SIVSLHHGEIWGSCQGEEITFYVKL 515 >ref|NP_943488.1| SilS [Klebsiella pneumoniae] gb|AAR07838.1| SilS [Klebsiella pneumoniae] Length = 491 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 6/142 (4%) Query: 12 MEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPGVIQVSLRLQKD 71 E A+E + L+ N P L E DP M +RAI+NLL NAL+++ + I VS+R Q+ Sbjct: 350 FEAWAEERNITLKFN--GMPCLVEGDPQMFRRAINNLLSNALRYTPEGQAITVSIREQES 407 Query: 72 TARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIARSIANLHHGELE 131 + +EN G PI EE +LF+RFYR S+ G+G+GL+I +SI HHG ++ Sbjct: 408 FFDLVIENPGKPIPEEHLSRLFDRFYRVDPSRQRKG--EGSGIGLAIVKSIVEAHHGRVQ 465 Query: 132 CEHSGGHFTFQLSL--LQGAIP 151 E F LS+ L+ IP Sbjct: 466 VESDVRSTRFILSVPRLEKMIP 487 >ref|NP_941212.1| probable sensor kinase (silver resistance) [Serratia marcescens] emb|CAE51668.1| probable sensor kinase (silver resistance) [Serratia marcescens] Length = 493 Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 6/142 (4%) Query: 12 MEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPGVIQVSLRLQKD 71 E A+E + L+ N P L E DP M +RAI+NLL NAL+++ + I VS+R Q+ Sbjct: 350 FEAWAEERNITLKFN--GMPCLVEGDPQMFRRAINNLLSNALRYTPEGQAITVSIREQES 407 Query: 72 TARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIARSIANLHHGELE 131 + +EN G PI EE +LF+RFYR S+ G+G+GL+I +SI HHG ++ Sbjct: 408 FFDLVIENPGKPIPEEHLSRLFDRFYRVDPSRQRK--GEGSGIGLAIVKSIVEAHHGRVQ 465 Query: 132 CEHSGGHFTFQLSL--LQGAIP 151 E F LS+ L+ IP Sbjct: 466 VESDVHSTRFILSVPRLEKMIP 487 >ref|ZP_00128496.1| COG0642: Signal transduction histidine kinase [Desulfovibrio desulfuricans G20] Length = 606 Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Query: 4 MLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPGVIQ 63 ++RQ + EM+P A E + +E +P TPL+ D D + NLL NA+K+S + Sbjct: 456 VIRQTVREMDPAAHEKNISIETQMPETPLMVTGDRDALCEVFRNLLDNAVKYSPNNSAVT 515 Query: 64 VSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIARSIA 123 VS R+ + A C+++ G I E + ++FERFYR H AGLGL+I R I Sbjct: 516 VSARITEGRAAFCIKDSGPGIPEASKERIFERFYRLDRDGDT-HKNGSAGLGLAICRRIV 574 Query: 124 NLHHGELECE 133 H GE+ E Sbjct: 575 KSHGGEIWVE 584 >gb|EAK70999.1| unknown [environmental sequence] Length = 491 Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 6/142 (4%) Query: 12 MEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPGVIQVSLRLQKD 71 E A+E + L+ N P L E DP M +RAI+NLL NAL+++ + I VS+R Q+ Sbjct: 350 FEAWAEERNITLKFN--GMPCLVEGDPQMFRRAINNLLSNALRYTPEGQAITVSIREQES 407 Query: 72 TARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIARSIANLHHGELE 131 + +EN G PI EE +LF+RFYR S+ G+G+GL+I +SI HHG ++ Sbjct: 408 FFDLVIENPGKPIPEEHLSRLFDRFYRVDPSRQRK--GEGSGIGLAIVKSIVEAHHGRVQ 465 Query: 132 CEHSGGHFTFQLSL--LQGAIP 151 E F LS+ L+ IP Sbjct: 466 VESDVRSTRFILSVPRLEQRIP 487 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 221,530,434 Number of extensions: 8247958 Number of successful extensions: 32134 Number of sequences better than 1.0e-05: 2144 Number of HSP's gapped: 31973 Number of HSP's successfully gapped: 2150 Length of query: 155 Length of database: 757,237,578 Length adjustment: 113 Effective length of query: 42 Effective length of database: 450,431,391 Effective search space: 18918118422 Effective search space used: 18918118422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)