BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0014.p
         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00098374.1| COG2207: AraC-type DNA-binding domain-contain...    70   1e-11
ref|ZP_00035519.1| COG4753: Response regulator containing CheY-l...    65   4e-10
ref|NP_269623.1| putative two-component response regulator [Stre...    65   6e-10
ref|NP_801922.1| putative two-component response regulator [Stre...    64   1e-09
ref|NP_665006.1| putative two-component response regulator [Stre...    64   1e-09

>ref|ZP_00098374.1| COG2207: AraC-type DNA-binding domain-containing proteins
           [Desulfitobacterium hafniense]
          Length = 428

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 52/84 (61%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           + DAA H   SP+HL ++F ++    F+DY+   R+E+   LL  P+  V + A  VG++
Sbjct: 344 IADAAQHLFISPSHLSRLFRQQLDCTFNDYLTRVRVEKAVELLKKPEFSVKDVALAVGFQ 403

Query: 62  NLSHFSKQFKEFYGVSPGDYRRHL 85
           N SHF+K F+++ GV+P  YR  L
Sbjct: 404 NQSHFAKVFRKYIGVTPLVYRNSL 427


>ref|ZP_00035519.1| COG4753: Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain [Enterococcus faecium]
          Length = 242

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+D A  F + P +LG+ F +ETG  F DY+   R++R   LL D  L + E + +VG  
Sbjct: 158 LKDVATQFHYHPAYLGRAFKKETGYSFHDYLLDFRIKRASALLKDTFLSIDEISQKVGID 217

Query: 62  NLSHFSKQFKEFYGVSPGDYRRHL 85
           ++S+FS  FK+  G SP +YR+ L
Sbjct: 218 HVSYFSVLFKKTTGHSPSNYRKKL 241


>ref|NP_269623.1| putative two-component response regulator [Streptococcus pyogenes]
 gb|AAK34344.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
          Length = 246

 Score = 64.7 bits (156), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 55/82 (67%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+  A    FSPN+L  +  +E G+ F DY+   RL++ K+LL    LK+YE A +VG++
Sbjct: 161 LKSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFE 220

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           ++++FS++FK+  GV+P  Y++
Sbjct: 221 DMNYFSQRFKQLVGVTPSQYKK 242


>ref|NP_801922.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 dbj|BAC63755.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
          Length = 243

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+  A    FSPN+L  +  ++ G+ F DY+   RL++ K+LL    LK+YE A +VG++
Sbjct: 158 LKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFE 217

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           ++++FS++FK+  GV+P  Y++
Sbjct: 218 DMNYFSQRFKQLVGVTPSQYKK 239


>ref|NP_665006.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gb|AAM79809.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
          Length = 246

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+  A    FSPN+L  +  ++ G+ F DY+   RL++ K+LL    LK+YE A +VG++
Sbjct: 161 LKSLAQQLGFSPNYLSVLIKKDLGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAEQVGFE 220

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           ++++FS++FK+  GV+P  Y++
Sbjct: 221 DMNYFSQRFKQLVGVTPSQYKK 242


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 132,835,314
Number of extensions: 4396709
Number of successful extensions: 14398
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 14555
Number of HSP's successfully gapped: 145
Length of query: 85
Length of database: 757,237,578
Length adjustment: 54
Effective length of query: 31
Effective length of database: 610,622,232
Effective search space: 18929289192
Effective search space used: 18929289192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)