BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0008.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_764660.1| maltose/maltodextrin transport permease [Staphy... 197 2e-49 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 196 5e-49 ref|NP_241347.1| ABC transporter (permiase) [Bacillus halodurans... 195 1e-48 ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 193 4e-48 gb|AAB17464.1| unknown 192 1e-47 >ref|NP_764660.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] gb|AAO04702.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] Length = 302 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 147/226 (65%), Gaps = 4/226 (1%) Query: 43 PFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVVXXXXRDSRIGHAFLISILRTIVGT 102 P N ++FN G D GGITF+PR +LDN++ + + + +A ISI +T++GT Sbjct: 34 PMINIFALAFNSGVDAQKGGITFYPRKFSLDNFKEIF---KQGTLLNALFISIAKTVIGT 90 Query: 103 TLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFSGGLIPTFLLLREFGMMDTFWVLVI 162 LSV+ TA+ AY L+ L R++ F + TM FS G++P ++LL + + DTFWV ++ Sbjct: 91 ILSVILTAMAAYVLTIKSLPFRRIISFFLVFTMLFSVGVVPLYILLNQLHLTDTFWVYIL 150 Query: 163 PGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLGVLTRIILPISGPVVATLSLFTAVY 222 P + SVYN++I RTFF LP+ ++E+AR+DGCN + +I+LP+S PVVA+++LF AV Sbjct: 151 PSLYSVYNILIMRTFFNQLPSSVIEAARVDGCNDFQIFWKIVLPMSKPVVASITLFNAVS 210 Query: 223 HWNDWFSASIYINDTRLIPIQTLLKQILNSN-IVTDQLQKAIGSSA 267 WNDWF+ + ++ + L P+ T+L+ +L + D L++ GS A Sbjct: 211 QWNDWFTGAFFVRNPNLKPLATVLQDMLTKQAAIADALKQKSGSYA 256 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 154/248 (62%), Gaps = 8/248 (3%) Query: 6 LAQESGERVMMKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITF 65 LA+ +G+R A D + + +LLL + LYP N+L +S N +DT GGI F Sbjct: 4 LAKLAGKR----RGADDFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYF 59 Query: 66 WPRSPTLDNYEVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRK 125 WPR T N+E V S++ HA +IS+LRT++GT +SV TA++AY +SR + + +K Sbjct: 60 WPREFTWYNFEHVF---SQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKK 116 Query: 126 VYMVFCIITMYFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGL 185 + ++TMY +GGLIPT+LL+RE ++ TFW+ +IPG+I V+N+I+ R+F GLP + Sbjct: 117 FVTIAFVLTMYLNGGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETI 176 Query: 186 VESARIDGCNHLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIY-INDTRLIPIQT 244 ESA+IDG +I LP+ PV+AT+SLF AV WN WF IY N L +Q Sbjct: 177 FESAKIDGAGEFTQFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQY 236 Query: 245 LLKQILNS 252 L +IL + Sbjct: 237 ELMKILQN 244 >ref|NP_241347.1| ABC transporter (permiase) [Bacillus halodurans] pir||A83710 ABC transporter (permiase) BH0481 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04200.1| ABC transporter (permiase) [Bacillus halodurans] Length = 293 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 152/251 (60%), Gaps = 6/251 (2%) Query: 19 SAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVV 78 S G +V + Y L L I PF + + SF + +P + +LD Y + Sbjct: 6 SLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYI 65 Query: 79 XXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFS 138 I + +ISIL T+VGT S+ T+++AYGLSR +L GR+V M + TM FS Sbjct: 66 F---STDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFS 122 Query: 139 GGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLG 198 GG+IPTFL++R G++DT+W L+IP I+ +N+II + FF +P L ESA+IDGCN +G Sbjct: 123 GGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVG 182 Query: 199 VLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVTDQ 258 + RI+ P+S P +AT+SLF AV +WN + A +Y+ND+ + PIQ LL+QI+ I++ Sbjct: 183 IFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIV---IMSSG 239 Query: 259 LQKAIGSSAAG 269 +Q + AG Sbjct: 240 MQGDLTELGAG 250 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 148/237 (62%), Gaps = 4/237 (1%) Query: 21 GDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVVXX 80 GD++ Y L ++ +TLYPF N L IS N DT GGI WPR TL+NY V+ Sbjct: 6 GDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYRVIFE 65 Query: 81 XXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFSGG 140 + F+ S+LRT++GT L V +A++A+ LSR + RK ++T+YFSGG Sbjct: 66 Y---DHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGG 122 Query: 141 LIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLGVL 200 LIP ++L+RE +++TFWV V+PGM++ +++II R+F GLP L ESA+IDG N + Sbjct: 123 LIPGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIF 182 Query: 201 TRIILPISGPVVATLSLFTAVYHWNDWFSASIY-INDTRLIPIQTLLKQILNSNIVT 256 RIILP+ PV+AT++LF AV WN WF +Y ++ L +Q L +IL + ++ Sbjct: 183 WRIILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMS 239 >gb|AAB17464.1| unknown Length = 260 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 157/251 (62%), Gaps = 6/251 (2%) Query: 19 SAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVV 78 S +++ ++IY LL+ I + PF + + SF + P + +LD Y + Sbjct: 7 SLKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYI 66 Query: 79 XXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFS 138 I + L+S+ T++GT +S+ ++++AYGLSR +L+GR+ M + TM FS Sbjct: 67 F---STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFS 123 Query: 139 GGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLG 198 GG+IPTFL+++ G++D++W L++P I+ +N+II + FF +P+ L ESA+IDGCN LG Sbjct: 124 GGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLG 183 Query: 199 VLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVTDQ 258 + +I+LP+S P +AT+SLF AV +WN + +A +Y+ND+ PIQ LL+QI+ IV+ Sbjct: 184 IFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIV---IVSSG 240 Query: 259 LQKAIGSSAAG 269 +Q + +G Sbjct: 241 MQGDMSEMGSG 251 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 424,034,267 Number of extensions: 16141271 Number of successful extensions: 52994 Number of sequences better than 1.0e-05: 1077 Number of HSP's gapped: 52214 Number of HSP's successfully gapped: 1077 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)