BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0055.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ73741.1| unknown [environmental sequence] 101 1e-20 gb|EAB61243.1| unknown [environmental sequence] 86 5e-16 ref|NP_440288.1| unknown protein [Synechocystis sp. PCC 6803] >g... 79 4e-14 ref|NP_819626.1| conserved hypothetical protein [Coxiella burnet... 70 3e-11 gb|EAK24167.1| unknown [environmental sequence] 63 4e-09 >gb|EAJ73741.1| unknown [environmental sequence] Length = 237 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 19 YNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETLITHIHGDHIGGLAELAGTPS 78 +NNNA++ + TLLIDCG T A+ A G Q++ ITH+H DH+ GL LA Sbjct: 2 FNNNALVTNSEGTLLIDCGYTIKPALLAQGLKLQDIDAVFITHVHADHMFGLERLANEGR 61 Query: 79 QEPHGKMTLLLAETLIEPLWQHPLLEPLHRKGDSRS-LADVFNVKPLKPDTPYTLSPSLT 137 + H K L+L L LW L L + G+ + L+D F++ L+ D + L + Sbjct: 62 YKYHKKARLILHHELYNELWHQCLKGVLAKNGEGENELSDYFDLVLLQND-EFELFGNF- 119 Query: 138 LELIRTPHMPGKASYSLLLNECVFYSADLTFQPELLLHL 176 +L R H PGK + L++N+ +FYS D P+LL+ L Sbjct: 120 YQLHRVSHTPGKVCFGLMINQSIFYSGDTVAIPQLLMQL 158 >gb|EAB61243.1| unknown [environmental sequence] Length = 253 Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 16/177 (9%) Query: 8 LGTGDAFSTK--YYNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETLITHIHGD 65 LGTG+AF + Y +N ++ G LLIDCG A + + LG S +++ ++H+H D Sbjct: 7 LGTGNAFCLEGNYQSNFLIISPDGDKLLIDCGSDARRPLCELGYSVEDIDTVYVSHLHSD 66 Query: 66 HIGGLAELAGTPSQEPHGKMTLLLA-ETLIEPLWQHPL---LEPLHRKGDSRSLADVFNV 121 HIGGL LA + P L A E+LI PLW+ L L + K S LAD F+V Sbjct: 67 HIGGLEWLAFSTYFNPTIPRPKLFAHESLIAPLWEQSLQGGLRSIFEK--SVVLADYFDV 124 Query: 122 KPLKPDTPYTLSPSLTLELIRTPHMPGKA----SYSLLL---NECVFYSADLTFQPE 171 PL D + L L ++L+ + H+ Y L++ + ++++AD+ F P+ Sbjct: 125 NPLTDDCSW-LWCGLEIKLVFSFHVQDDGVECPCYGLIITSPDTTIYFTADIRFCPD 180 >ref|NP_440288.1| unknown protein [Synechocystis sp. PCC 6803] pir||S74928 hypothetical protein sll0647 - Synechocystis sp. (strain PCC 6803) dbj|BAA16968.1| ORF_ID:sll0647~unknown protein [Synechocystis sp. PCC 6803] Length = 256 Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 1 MTIYLQMLGTGDAFST--KYYNNNAVLQ-DHGYTLLIDCGVTAPQAIKALGKSFQEVTET 57 M L LG+G AF+ + +NA+L D+G LIDCG ++ ALG S +++T+ Sbjct: 1 MAANLTFLGSGSAFTVGADNFQSNAILTLDNGKKFLIDCGTDIRFSLYALGLSHRDITDI 60 Query: 58 LITHIHGDHIGGLAELAGTPSQEPH-GKMTLLLAETLIEPLWQHPLLEPLHR-KGDSRSL 115 ++H+H DH+GGL + + +P+ GK L L++ + LW+ L + +G + Sbjct: 61 YVSHLHSDHVGGLEYVGFSTMFDPNCGKPNLYLSQDIAADLWERSLAGGMEAIEGGMTEV 120 Query: 116 ADVFNVKPLKPDTPYTLSPSLTLELIRTPH-------MPGKASYSLLLNECVFYSADLTF 168 F + L P +T ++ +LI+ H MP + + + VF+S D F Sbjct: 121 DSYFQIHALGPGETFTWE-NVNFQLIKLNHVDTGSMLMPAYGLFFTVNHFQVFFSNDTKF 179 Query: 169 QPELLLHLVHNRGI 182 + L H I Sbjct: 180 SYDRLQEYFHRADI 193 >ref|NP_819626.1| conserved hypothetical protein [Coxiella burnetii RSA 493] gb|AAO90140.1| conserved hypothetical protein [Coxiella burnetii RSA 493] Length = 249 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 14/176 (7%) Query: 8 LGTGDAFS--TKYYNNNAVLQDHGYT-LLIDCGVTAPQAIKALGKSFQEVTETLITHIHG 64 +G+G AF+ + + +N +L++ + LLIDCG A ++K + + ++ ++H H Sbjct: 1 MGSGSAFADISNNFQSNILLENSNHKRLLIDCGTDAHHSLKNVNLRYADIDSVYVSHFHF 60 Query: 65 DHIGGLAELAGTPSQEPHGKM-TLLLAETLIEPLWQHPLLEPLHR-KGDS-RSLADVFNV 121 DH+GGL LA + +P K L + +++ LW H L L KG+S +L F + Sbjct: 61 DHVGGLEWLAFSAYFDPAVKKPKLFIHPSMLNILWDHVLSGGLQSLKGESPATLETYFTL 120 Query: 122 KPLKPDTPYTLSPSLTLELIRTPHM-PGKA---SYSLLLN---ECVFYSADLTFQP 170 P++ + +T S+ E+++T H+ GK SY L + +F + D F P Sbjct: 121 APIREEKYFTWE-SINFEMVKTIHVHNGKLLLPSYGLFFSLEKTKIFITTDTQFFP 175 >gb|EAK24167.1| unknown [environmental sequence] Length = 255 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 15/183 (8%) Query: 5 LQMLGTGDA--FSTKYYNNNAVLQ--DHGYTLLIDCGVTAPQAIKALGKSFQEVTETLIT 60 +Q LG G S +++N +L LLIDCG ++ +G ++ +T+ I+ Sbjct: 1 MQFLGVGSQCDLSANSFHSNVLLSMSSSERALLIDCGSDVKHSLSRVGLNYDIITDVYIS 60 Query: 61 HIHGDHIGGLAELA--GTPSQEPHGKMTLLLAETLIEPLWQHPLLEPLHRKGDSRSLADV 118 H+H DH+GGL L + K+ L + E L LW++ L L+ DS+S +V Sbjct: 61 HLHSDHVGGLEWLCFLKRYDSDSKKKLRLWIEENLSYSLWENTLKGGLNYLTDSKSSLEV 120 Query: 119 -FNVKPLKPDTPYTLSPSLTLELIRTPHMPGKA----SYSLLLNEC---VFYSADLTFQP 170 F+V + + S T L+ H+ G + Y L + +F+S+D + Sbjct: 121 FFDVNRIAKGGNFEF-ESATFTLVPIVHIEGPSGCMPCYGLCIEYAGHKIFFSSDTQYND 179 Query: 171 ELL 173 L Sbjct: 180 GYL 182 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 295,137,793 Number of extensions: 11901081 Number of successful extensions: 28189 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 28255 Number of HSP's successfully gapped: 6 Length of query: 192 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 73 Effective length of database: 434,140,797 Effective search space: 31692278181 Effective search space used: 31692278181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)