BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0049.p
         (205 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243774.1| BH2908~unknown [Bacillus halodurans] >gi|253704...    60   4e-08

>ref|NP_243774.1| BH2908~unknown [Bacillus halodurans]
 pir||D84013 hypothetical protein BH2908 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06627.1| BH2908 [Bacillus halodurans]
          Length = 202

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 14  VEYCNLELRFDRQHIQDLIKDLIKEGYSLYWSENETVFLISVRTGRKLVKLRFQRIKDGF 73
           VE+ +L +   ++ +   IK ++ E YSLYW  +E    + +   + + ++ F +     
Sbjct: 8   VEFVDLSVNLPKKTLHHFIKQMMNEEYSLYWRYDEDQIKLLIEKEQTVHEIPFIKNAPFL 67

Query: 74  KLVGDYM-IRDARLSEWMEKLIGDMRGHAVVKRFRDRQIIIENILFGEVIRLVEISGYQQ 132
            L    + + +  +++ +E+L+   +G  VVKR       I +   G++  ++EI G ++
Sbjct: 68  TLSAKSLFVTEPIIAQAIERLLQSEKGSGVVKRHTKGPQYITSYQEGDIESMIEIDGSEK 127

Query: 133 RVLYQKGPLLS----DQEL-TKLFYSVEGEERIRDRRLEVDEQLDLLHKAIQSKDDERTA 187
            ++ + G ++     DQ +  +  Y++          LE+D  L  L++A+QS+D +   
Sbjct: 128 VMMNRNGSMIQYKDDDQTMEPQTIYNIVS--------LEIDYLLMELYEALQSRDSKVVE 179

Query: 188 ACKARLAELTRELNMLE 204
            CK +L+ L  +   LE
Sbjct: 180 TCKQKLSRLANQRKQLE 196


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 290,383,200
Number of extensions: 11273879
Number of successful extensions: 32637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 32635
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 757,237,578
Length adjustment: 120
Effective length of query: 85
Effective length of database: 431,425,698
Effective search space: 36671184330
Effective search space used: 36671184330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)