BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0048.p (440 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P80859|6PG2_BACSU 6-phosphogluconate dehydrogenase, decarboxy... 694 0.0 ref|NP_691106.1| 6-phosphogluconate dehydrogenase [Oceanobacillu... 653 0.0 ref|NP_390267.1| similar to 6-phosphogluconate dehydrogenase (pe... 646 0.0 ref|NP_464901.1| similar to 6-phosphogluconate dehydrogenase [Li... 646 0.0 ref|NP_842729.1| 6-phosphogluconate dehydrogenase, decarboxylati... 644 0.0 >sp|P80859|6PG2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating II (GNTZII) emb|CAB14318.2| yqjI [Bacillus subtilis subsp. subtilis str. 168] Length = 469 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/438 (74%), Positives = 374/438 (85%) Query: 1 VYNRSPEKTHDLINEAEGKNLTGTFSIEEFVESLEVPRKILIMVQAGKATDATIEQLLPH 60 VYNRS KT + + EA+GKN+ GT+SIEEFV+SLE PRKIL+MV+AG ATDATI+ LLPH Sbjct: 31 VYNRSSSKTEEFLQEAKGKNVVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPH 90 Query: 61 LDQGDIIIDGGNAYFPDTVRRNKELEAKGFRFIGTGVSGGEEGALKGPSIMPGGQESAYK 120 L++ DI+IDGGN Y+ DT RRNKEL G FIGTGVSGGEEGALKGPSIMPGGQ+ A++ Sbjct: 91 LEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHE 150 Query: 121 LVEPILTAISAKVNGEPCCTYIGPDGAGHYVKMVHNGIEYGDMQLIGEAYHLLKDVLGLD 180 LV+PIL AISAKV+GEPC TYIGPDGAGHYVKMVHNGIEYGDMQLI E+Y +LK VLGL Sbjct: 151 LVKPILEAISAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLISESYFILKQVLGLS 210 Query: 181 AKELHSIFADWNSGELDSYLIEITKDIFAEYDEETGKPMVDVILDAAGQKGTGKWTSQSS 240 A ELH +FA+WN GELDSYLIEIT DIF + DEETGKP+VDVILD AGQKGTGKWTSQS+ Sbjct: 211 ADELHEVFAEWNKGELDSYLIEITADIFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSA 270 Query: 241 LDLGVPLSMITESVFSRFLSAMKEERVAASKVLSGPVTEPFQGDKAEFIENVRKALFASK 300 LDLGVPL +ITESVF+RF+SAMKEERV AS +LSGP +P +K E IE VRKALF SK Sbjct: 271 LDLGVPLPIITESVFARFISAMKEERVKASGLLSGPEVKPVTENKEELIEAVRKALFMSK 330 Query: 301 IVSYAQGFAQLRVASEEYNWDLKYGNLAKIWRGGCIIRSRFLQNITDAYENNPELKNLLL 360 I SYAQGFAQ++ ASEEYNWDLKYG +A I+RGGCIIR+ FLQ I +AY+ PEL NLLL Sbjct: 331 ICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLL 390 Query: 361 DPFFKNIMDTYQSAWRQVVSAAVAQGVPVPGFSSALAYYDSYRTERLPANLLQAQRDYFG 420 D +FKNI+++YQ A RQV+S AVAQGVPVP FSSALAYYDSYRT LPANL+QAQRDYFG Sbjct: 391 DSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFG 450 Query: 421 AHTFKRVDKEGVFHHNWL 438 AHT++R DKEG+FH W+ Sbjct: 451 AHTYERTDKEGIFHTEWM 468 >ref|NP_691106.1| 6-phosphogluconate dehydrogenase [Oceanobacillus iheyensis HTE831] dbj|BAC12141.1| 6-phosphogluconate dehydrogenase (decarboxylating) [Oceanobacillus iheyensis HTE831] Length = 468 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/439 (69%), Positives = 367/439 (83%), Gaps = 1/439 (0%) Query: 1 VYNRSPEKTHD-LINEAEGKNLTGTFSIEEFVESLEVPRKILIMVQAGKATDATIEQLLP 59 V+NRS EKT + L NEA GK G +IEEFV+SLE PRKI++MV+AG ATDATIE L P Sbjct: 30 VFNRSYEKTENFLANEASGKKFIGAKTIEEFVDSLEKPRKIMLMVKAGPATDATIESLKP 89 Query: 60 HLDQGDIIIDGGNAYFPDTVRRNKELEAKGFRFIGTGVSGGEEGALKGPSIMPGGQESAY 119 HLD+GDI+IDGGN + DT+RRNKEL+ G FIGTGVSGGEEGAL GPSIMPGGQ AY Sbjct: 90 HLDKGDILIDGGNTLYEDTIRRNKELDESGIHFIGTGVSGGEEGALNGPSIMPGGQAEAY 149 Query: 120 KLVEPILTAISAKVNGEPCCTYIGPDGAGHYVKMVHNGIEYGDMQLIGEAYHLLKDVLGL 179 KLV PI AISAKV+ +PC TYIGP+GAGH+VKMVHNGIEYGDMQLI EAY L+K+VLGL Sbjct: 150 KLVAPIFEAISAKVDKDPCVTYIGPNGAGHFVKMVHNGIEYGDMQLIAEAYDLMKNVLGL 209 Query: 180 DAKELHSIFADWNSGELDSYLIEITKDIFAEYDEETGKPMVDVILDAAGQKGTGKWTSQS 239 DAKELH++F +WN GELDSYLIEIT DIF + DEETGKP+V+VILD AGQKGTGKWTS++ Sbjct: 210 DAKELHNVFKEWNDGELDSYLIEITADIFTKVDEETGKPLVEVILDKAGQKGTGKWTSKN 269 Query: 240 SLDLGVPLSMITESVFSRFLSAMKEERVAASKVLSGPVTEPFQGDKAEFIENVRKALFAS 299 +LDLGVPL +ITESVF+RF+S++K+ERV ASK LSGP K E IE +R+AL+ S Sbjct: 270 ALDLGVPLPLITESVFARFISSLKDERVRASKELSGPTNAMLGESKEELIEAIRQALYMS 329 Query: 300 KIVSYAQGFAQLRVASEEYNWDLKYGNLAKIWRGGCIIRSRFLQNITDAYENNPELKNLL 359 KIVSYAQGFAQ+R AS+EY+W+L YG++A IWRGGCIIR++FLQ I DAY+ + +L NL+ Sbjct: 330 KIVSYAQGFAQMRAASDEYDWNLSYGDIAMIWRGGCIIRAKFLQKIKDAYDRDSQLPNLM 389 Query: 360 LDPFFKNIMDTYQSAWRQVVSAAVAQGVPVPGFSSALAYYDSYRTERLPANLLQAQRDYF 419 LDP+FK I++ YQS+ R+VVS AVA G+ VP FSSA+AYYDSYR+E LPANL+QAQRDYF Sbjct: 390 LDPYFKEIVEGYQSSLRKVVSLAVAHGIAVPTFSSAIAYYDSYRSEDLPANLIQAQRDYF 449 Query: 420 GAHTFKRVDKEGVFHHNWL 438 GAHT++R DK+G+FH W Sbjct: 450 GAHTYERKDKDGIFHSQWF 468 >ref|NP_390267.1| similar to 6-phosphogluconate dehydrogenase (pentose phosphate) [Bacillus subtilis] pir||A69964 6-phosphogluconate dehydrogenase (pentose) homolog yqjI - Bacillus subtilis dbj|BAA12615.1| YqjI [Bacillus subtilis] Length = 406 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/405 (75%), Positives = 347/405 (85%) Query: 34 LEVPRKILIMVQAGKATDATIEQLLPHLDQGDIIIDGGNAYFPDTVRRNKELEAKGFRFI 93 +E PRKIL+MV+AG ATDATI+ LLPHL++ DI+IDGGN Y+ DT RRNKEL G FI Sbjct: 1 METPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFI 60 Query: 94 GTGVSGGEEGALKGPSIMPGGQESAYKLVEPILTAISAKVNGEPCCTYIGPDGAGHYVKM 153 GTGVSGGEEGALKGPSIMPGGQ+ A++LV+PIL AISAKV+GEPC TYIGPDGAGHYVKM Sbjct: 61 GTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKVDGEPCTTYIGPDGAGHYVKM 120 Query: 154 VHNGIEYGDMQLIGEAYHLLKDVLGLDAKELHSIFADWNSGELDSYLIEITKDIFAEYDE 213 VHNGIEYGDMQLI E+Y +LK VLGL A ELH +FA+WN GELDSYLIEIT DIF + DE Sbjct: 121 VHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITADIFTKKDE 180 Query: 214 ETGKPMVDVILDAAGQKGTGKWTSQSSLDLGVPLSMITESVFSRFLSAMKEERVAASKVL 273 ETGKP+VDVILD AGQKGTGKWTSQS+LDLGVPL +ITESVF+RF+SAMKEERV AS +L Sbjct: 181 ETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEERVKASGLL 240 Query: 274 SGPVTEPFQGDKAEFIENVRKALFASKIVSYAQGFAQLRVASEEYNWDLKYGNLAKIWRG 333 SGP +P +K E IE VRKALF SKI SYAQGFAQ++ ASEEYNWDLKYG +A I+RG Sbjct: 241 SGPEVKPVTENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRG 300 Query: 334 GCIIRSRFLQNITDAYENNPELKNLLLDPFFKNIMDTYQSAWRQVVSAAVAQGVPVPGFS 393 GCIIR+ FLQ I +AY+ PEL NLLLD +FKNI+++YQ A RQV+S AVAQGVPVP FS Sbjct: 301 GCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFS 360 Query: 394 SALAYYDSYRTERLPANLLQAQRDYFGAHTFKRVDKEGVFHHNWL 438 SALAYYDSYRT LPANL+QAQRDYFGAHT++R DKEG+FH W+ Sbjct: 361 SALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWM 405 >ref|NP_464901.1| similar to 6-phosphogluconate dehydrogenase [Listeria monocytogenes EGD-e] pir||AH1246 6-phosphogluconate dehydrogenase homolog lmo1376 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99454.1| lmo1376 [Listeria monocytogenes] Length = 472 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/437 (69%), Positives = 360/437 (82%) Query: 1 VYNRSPEKTHDLINEAEGKNLTGTFSIEEFVESLEVPRKILIMVQAGKATDATIEQLLPH 60 ++NRS EKT ++ E K L T+S+EEFVESLEVPR+ILIMV+AG ATD IE + P Sbjct: 31 IFNRSTEKTKAVMEENADKKLVPTYSLEEFVESLEVPRRILIMVKAGDATDMMIEAVKPF 90 Query: 61 LDQGDIIIDGGNAYFPDTVRRNKELEAKGFRFIGTGVSGGEEGALKGPSIMPGGQESAYK 120 L++GDI+IDGGNA+F DT+RRNKEL +GF FIGTGVSGGEEGALKGPSIMPGGQ AY Sbjct: 91 LNEGDILIDGGNAFFKDTIRRNKELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQRKAYD 150 Query: 121 LVEPILTAISAKVNGEPCCTYIGPDGAGHYVKMVHNGIEYGDMQLIGEAYHLLKDVLGLD 180 LV PIL I+A +GEPC TYIGPDGAGHYVKMVHNGIEYGDMQLI EAY +LK++ GL Sbjct: 151 LVAPILREIAAVADGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYTILKEIGGLS 210 Query: 181 AKELHSIFADWNSGELDSYLIEITKDIFAEYDEETGKPMVDVILDAAGQKGTGKWTSQSS 240 EL +F +WN+GELDSYLIEITK+I DEETGKP+VDVILD AGQKGTGKWTSQS+ Sbjct: 211 HDELADVFEEWNNGELDSYLIEITKNILKVKDEETGKPIVDVILDKAGQKGTGKWTSQSA 270 Query: 241 LDLGVPLSMITESVFSRFLSAMKEERVAASKVLSGPVTEPFQGDKAEFIENVRKALFASK 300 LDLGVPLS+ITESVF+R++SA+KEERV AS VL+GP F+GDK F+E+VR+AL+ SK Sbjct: 271 LDLGVPLSLITESVFARYISALKEERVYASTVLTGPSNYRFEGDKKAFVESVRRALYFSK 330 Query: 301 IVSYAQGFAQLRVASEEYNWDLKYGNLAKIWRGGCIIRSRFLQNITDAYENNPELKNLLL 360 I SYAQGFAQ+R ASEEYNWDL+YG +AKI+R GCIIR+RFLQ ITDAY + LKNLLL Sbjct: 331 IASYAQGFAQMRAASEEYNWDLQYGEIAKIFRAGCIIRARFLQKITDAYNQDKNLKNLLL 390 Query: 361 DPFFKNIMDTYQSAWRQVVSAAVAQGVPVPGFSSALAYYDSYRTERLPANLLQAQRDYFG 420 DP+FK+I YQ R VV+ AV G+PVP F++A++YYDSYR+E L ANL+QAQRDYFG Sbjct: 391 DPYFKDIAHNYQGDLRTVVAEAVKAGIPVPTFTAAISYYDSYRSEVLSANLIQAQRDYFG 450 Query: 421 AHTFKRVDKEGVFHHNW 437 AHT++RVDK GVFH W Sbjct: 451 AHTYERVDKPGVFHTEW 467 >ref|NP_842729.1| 6-phosphogluconate dehydrogenase, decarboxylating [Bacillus anthracis str. Ames] gb|AAP24215.1| 6-phosphogluconate dehydrogenase, decarboxylating [Bacillus anthracis str. Ames] Length = 469 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/439 (68%), Positives = 359/439 (81%), Gaps = 1/439 (0%) Query: 1 VYNRSPEKTHDLINEAEGKNLTGTFSIEEFVESLEVPRKILIMVQAGKATDATIEQLLPH 60 +Y+ S EK + I E GKNL GT +EEFV SLE PRKIL+MV AG+ TD I+ L+PH Sbjct: 31 LYDISKEKVDETIEENRGKNLVGTHIVEEFVNSLESPRKILLMVNAGEITDKAIDSLVPH 90 Query: 61 LDQGDIIIDGGNAYFPDTVRRNKELEAKGFRFIGTGVSGGEEGALKGPSIMPGGQESAYK 120 LD+GDI+IDGGN YF DT+RRNK L +G FIG GVSGGEEGALKGPSIMPGGQ+ AY+ Sbjct: 91 LDKGDILIDGGNTYFVDTIRRNKRLAEEGINFIGAGVSGGEEGALKGPSIMPGGQKDAYE 150 Query: 121 LVEPILTAISAKVNGEPCCTYIGPDGAGHYVKMVHNGIEYGDMQLIGEAYHLLKDVLGLD 180 V+ +L ISAKVN EPCC+YIGP+GAGHYVKMVHNGIEYGDMQLI EAY LK L L Sbjct: 151 KVKDMLENISAKVNNEPCCSYIGPNGAGHYVKMVHNGIEYGDMQLICEAYFFLKQTLDLT 210 Query: 181 AKELHSIFADWNSGELDSYLIEITKDIFAEYDEETGKPMVDVILDAAGQKGTGKWTSQSS 240 A+E H IFA+WN GEL+SYLIEIT DIF + DEETGKP+VDVILD AGQKGTGKWTSQS+ Sbjct: 211 AEEFHEIFAEWNKGELNSYLIEITADIFKKKDEETGKPLVDVILDTAGQKGTGKWTSQSA 270 Query: 241 LDLGVPLSMITESVFSRFLSAMKEERVAASKVLSGPVTEPFQG-DKAEFIENVRKALFAS 299 LDLG+ L +ITESVF+R +SA+KEERV ASKVLSGP + G +KAE IE VR+AL+ S Sbjct: 271 LDLGISLPIITESVFARCISALKEERVNASKVLSGPKDKTAIGVEKAELIEAVRQALYMS 330 Query: 300 KIVSYAQGFAQLRVASEEYNWDLKYGNLAKIWRGGCIIRSRFLQNITDAYENNPELKNLL 359 KI SYAQGF QL+ ASEEYNW+L +G+++ +WRGGCIIR+ FLQNI +AYE N +L NLL Sbjct: 331 KICSYAQGFTQLKAASEEYNWNLDFGSISMLWRGGCIIRAAFLQNIKEAYETNTDLPNLL 390 Query: 360 LDPFFKNIMDTYQSAWRQVVSAAVAQGVPVPGFSSALAYYDSYRTERLPANLLQAQRDYF 419 LDP+FK I+++YQ RQ++S AV QG+P+P FS+A++YYDSYRT +LPANLLQAQRDYF Sbjct: 391 LDPYFKEIVESYQGGLRQIISMAVQQGIPIPAFSAAISYYDSYRTAKLPANLLQAQRDYF 450 Query: 420 GAHTFKRVDKEGVFHHNWL 438 GAHT+KRVDKEG FH W+ Sbjct: 451 GAHTYKRVDKEGTFHTKWI 469 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 683,832,802 Number of extensions: 29909789 Number of successful extensions: 79676 Number of sequences better than 1.0e-05: 732 Number of HSP's gapped: 78555 Number of HSP's successfully gapped: 740 Length of query: 440 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 311 Effective length of database: 406,989,807 Effective search space: 126573829977 Effective search space used: 126573829977 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)