BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0046.p
         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658760.1| RHOD, Rhodanese Homology Domain [Bacillus anthr...   116   1e-25
ref|NP_981164.1| rhodanese-like domain protein [Bacillus cereus ...   116   2e-25
ref|NP_834432.1| Molybdopterin biosynthesis MoeB protein [Bacill...   115   3e-25
ref|NP_693226.1| hypothetical protein OB2305 [Oceanobacillus ihe...    99   4e-20
gb|EAC78545.1| unknown [environmental sequence]                        91   7e-18

>ref|NP_658760.1| RHOD, Rhodanese Homology Domain [Bacillus anthracis A2012]
 ref|NP_847175.1| rhodanese-like domain protein [Bacillus anthracis str. Ames]
 gb|AAP28661.1| rhodanese-like domain protein [Bacillus anthracis str. Ames]
          Length = 101

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 71/96 (73%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M E+  IT +E+++RLE+GE L L+DVREDEEVA G IP A HI MG+IP   +   +E 
Sbjct: 1  MTEVKTITTEEVQERLENGETLFLVDVREDEEVATGKIPEAVHIKMGDIPNKVDFFDKEN 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++FICRSG RS+ VC YL + G++T N+ GGM+++
Sbjct: 61 EYIFICRSGMRSENVCHYLNEQGFKTVNMVGGMLQY 96


>ref|NP_981164.1| rhodanese-like domain protein [Bacillus cereus ATCC 10987]
 gb|AAS43772.1| rhodanese-like domain protein [Bacillus cereus ATCC 10987]
          Length = 101

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 70/96 (72%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M E+  IT +E+++RLE GE L L+DVREDEEVA G IP A HI MG+IP   +   +E 
Sbjct: 1  MTEVKTITTEEVQERLEKGETLFLVDVREDEEVAAGKIPEAVHIKMGDIPNKVDFFDKEN 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++FICRSG RS+ VC YL + G++T N+ GGM+++
Sbjct: 61 EYIFICRSGMRSENVCHYLNEQGFKTVNMVGGMLQY 96


>ref|NP_834432.1| Molybdopterin biosynthesis MoeB protein [Bacillus cereus ATCC
          14579]
 gb|AAP11633.1| Molybdopterin biosynthesis MoeB protein [Bacillus cereus ATCC
          14579]
          Length = 101

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 71/96 (73%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M E+  IT +E+++RLE+GE L L+DVREDEEVA G IP A HI MG+IP   +   +E 
Sbjct: 1  MTEVKTITTEEVQERLENGETLFLVDVREDEEVAAGEIPEAVHIKMGDIPHKVDFFNKEN 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++FICRSG RS+ VC YL + G++T N+ GGM+++
Sbjct: 61 EYIFICRSGMRSENVCHYLNEQGFKTVNMVGGMLQY 96


>ref|NP_693226.1| hypothetical protein OB2305 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14261.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 102

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M EI +I+ +E+ + ++   ++VL+DVREDEEVA G+I  AKHI + +IP   E L ++ 
Sbjct: 1  MAEIKEISPEEVEE-IKDENNVVLVDVREDEEVAQGIIENAKHIKLSDIPHEYENLNKDK 59

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++ ICRSG RS    E+LQ  G+   N+SGGM+EW
Sbjct: 60 EYIMICRSGRRSYNASEFLQDQGFNVKNMSGGMLEW 95


>gb|EAC78545.1| unknown [environmental sequence]
          Length = 104

 Score = 91.3 bits (225), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 4  IPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEAEFV 63
          I +I   EL+  L+  ++L+LIDVRE+EE A   I  + HIPM +IP H ++L ++  + 
Sbjct: 2  IKEILVNELKDSLDK-KNLILIDVRENEEYAICKIEPSVHIPMNKIPSHLDKLDKDTGYA 60

Query: 64 FICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
           IC SG RS  VC YLQ  G++  N+ GG+ +W
Sbjct: 61 IICHSGVRSHNVCFYLQNHGFKVKNVVGGIHQW 93


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 157,836,374
Number of extensions: 6020319
Number of successful extensions: 15622
Number of sequences better than 1.0e-05: 254
Number of HSP's gapped: 15851
Number of HSP's successfully gapped: 254
Length of query: 102
Length of database: 757,237,578
Length adjustment: 69
Effective length of query: 33
Effective length of database: 569,895,747
Effective search space: 18806559651
Effective search space used: 18806559651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)