BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0027.p (175 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471689.1| similar to unknown proteins [Listeria innocua] ... 245 3e-64 ref|NP_691427.1| intracellular proteinase [Oceanobacillus iheyen... 236 1e-61 ref|ZP_00182816.1| hypothetical protein Exigu185201 [Exiguobacte... 234 5e-61 ref|NP_868417.1| intracellular proteinase pfpI [Pirellula sp. 1]... 180 2e-44 gb|EAI30686.1| unknown [environmental sequence] 174 9e-43 >ref|NP_471689.1| similar to unknown proteins [Listeria innocua] ref|NP_465780.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AH1356 hypothetical protein lmo2256 [imported] - Listeria monocytogenes (strain EGD-e) pir||AI1726 hypothetical protein homolog lin2358 [imported] - Listeria innocua (strain Clip11262) emb|CAD00334.1| lmo2256 [Listeria monocytogenes] emb|CAC97585.1| lin2358 [Listeria innocua] Length = 173 Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 121/172 (70%), Positives = 137/172 (79%), Gaps = 1/172 (0%) Query: 1 MRLTGKKVIALVDDEFEDLELWYPVYRVREEGAEVHLAGLEKDKTYVGKYGVPAKAEYSW 60 M L GKKVIALV ++FEDLELWYPV R+RE GA VHL E K Y GKYGVP ++Y + Sbjct: 1 MTLKGKKVIALVSEDFEDLELWYPVLRLREAGASVHLVAEEAKKVYHGKYGVPVTSDYDF 60 Query: 61 DELDAADYDGILVPGGWAPDKIRRXXXAVLKLVQDFNAAKKPIGQICHAGWVLISAKILE 120 D + A DYDGILVPGGW+PDK+RR +VL LV+ F+ AKKPIGQICHAGWVL+SA ILE Sbjct: 61 DSVRAEDYDGILVPGGWSPDKLRRFD-SVLNLVRAFDKAKKPIGQICHAGWVLVSAGILE 119 Query: 121 GVTVTSTPGIRDDMENAGAIWKDEAVVTDGHIISARRPPDLPPYGKAFCDAL 172 GV VTSTPGI+DDM NAGAIW +E VVTDGHIIS+RRPPDLP Y AF AL Sbjct: 120 GVNVTSTPGIKDDMTNAGAIWHNEPVVTDGHIISSRRPPDLPEYLPAFISAL 171 >ref|NP_691427.1| intracellular proteinase [Oceanobacillus iheyensis HTE831] dbj|BAC12462.1| intracellular proteinase [Oceanobacillus iheyensis HTE831] Length = 174 Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/175 (64%), Positives = 139/175 (79%), Gaps = 1/175 (0%) Query: 1 MRLTGKKVIALVDDEFEDLELWYPVYRVREEGAEVHLAGLEKDKTYVGKYGVPAKAEYSW 60 M+L KKV+ALVD +FEDLELWYPV R+REEGA+V L G E + Y+GKYGVP ++++++ Sbjct: 1 MQLKNKKVLALVDHDFEDLELWYPVLRLREEGAQVDLIGKEANHKYIGKYGVPVESDFAF 60 Query: 61 DELDAADYDGILVPGGWAPDKIRRXXXAVLKLVQDFNAAKKPIGQICHAGWVLISAKILE 120 +++ ADYD ILVPGGWAPDK+RR VL +V++ N AKKPIGQICHAGWVLISA IL Sbjct: 61 TDVNDADYDAILVPGGWAPDKLRRFP-EVLDMVRNMNQAKKPIGQICHAGWVLISANILN 119 Query: 121 GVTVTSTPGIRDDMENAGAIWKDEAVVTDGHIISARRPPDLPPYGKAFCDALAGE 175 G TVTSTPGI+DDM NAGA W DE VV D H++S+RRPPDLP Y + F + LA + Sbjct: 120 GKTVTSTPGIKDDMTNAGATWVDEPVVVDEHLVSSRRPPDLPDYLREFINVLANK 174 >ref|ZP_00182816.1| hypothetical protein Exigu185201 [Exiguobacterium sp. 255-15] Length = 176 Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 110/175 (62%), Positives = 137/175 (78%), Gaps = 1/175 (0%) Query: 1 MRLTGKKVIALVDDEFEDLELWYPVYRVREEGAEVHLAGLEKDKTYVGKYGVPAKAEYSW 60 MRL GKK+I LV ++FEDLELWYPV+R+REEGA V + G + + Y+GKYGVP ++ ++ Sbjct: 2 MRLAGKKIIQLVSNDFEDLELWYPVHRLREEGATVDIVGEKAGEKYIGKYGVPIVSDKTF 61 Query: 61 DELDAADYDGILVPGGWAPDKIRRXXXAVLKLVQDFNAAKKPIGQICHAGWVLISAKILE 120 DE++ ADYD ILVPGGW+PD +RR +VL +V+ FN K+PIGQICHAGWVLISA +L+ Sbjct: 62 DEINPADYDAILVPGGWSPDLLRRFD-SVLTMVRHFNETKQPIGQICHAGWVLISAGVLK 120 Query: 121 GVTVTSTPGIRDDMENAGAIWKDEAVVTDGHIISARRPPDLPPYGKAFCDALAGE 175 G+ VTSTPGI+DDM NAGA W DE VV DGHIIS+RRPPDLP Y + F L G Sbjct: 121 GINVTSTPGIKDDMTNAGATWHDEPVVVDGHIISSRRPPDLPDYMREFIRVLEGS 175 >ref|NP_868417.1| intracellular proteinase pfpI [Pirellula sp. 1] emb|CAD78695.1| intracellular proteinase pfpI [Pirellula sp.] Length = 196 Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Query: 3 LTGKKVIALVDDEFEDLELWYPVYRVREEGAEVHLAGLEKDKTYVGKYGVPAKAEYSWDE 62 L GK+V++ V + +EDLELWYP R+ E GAE +AG + + Y GK G P ++ + D Sbjct: 27 LVGKRVLSFVGEIYEDLELWYPKLRLIEAGAEFFVAGPKAGEKYDGKLGYPCVSDLAIDA 86 Query: 63 LDAADYDGILVPGGWAPDKIRRXXXAVLKLVQDFNAAKKPIGQICHAGWVLISAKILEGV 122 +A +DG+LVPGG+ PDK+RR VL+LV+DF+AAKKPI ICH GW+ ISA + GV Sbjct: 87 CEADSFDGLLVPGGFMPDKLRRDPK-VLQLVRDFDAAKKPIAAICHGGWIPISAGVYRGV 145 Query: 123 TVTSTPGIRDDMENAGAIWKDEAVVTDGHIISARRPPDLPPYGKAFCDALA 173 VT +PGI+DD+ NAGAI++D +VV DGH +S+RRP DLP + + F LA Sbjct: 146 RVTGSPGIKDDLVNAGAIFEDASVVVDGHHVSSRRPDDLPDFCRHFIALLA 196 >gb|EAI30686.1| unknown [environmental sequence] Length = 179 Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 83/172 (48%), Positives = 113/172 (65%), Gaps = 1/172 (0%) Query: 2 RLTGKKVIALVDDEFEDLELWYPVYRVREEGAEVHLAGLEKDKTYVGKYGVPAKAEYSWD 61 +L +V+ LV D +EDLELWYP R+ E G V LAG ++ Y GK+G P ++ + Sbjct: 6 QLATIRVLCLVGDAYEDLELWYPKLRIEEAGGHVTLAGRQQGAEYAGKHGYPCVSDAAIG 65 Query: 62 ELDAADYDGILVPGGWAPDKIRRXXXAVLKLVQDFNAAKKPIGQICHAGWVLISAKILEG 121 +++A D+ GIL+PGGW PD +RR VL+LV+DF K + ICH GW+ ISA + G Sbjct: 66 DMEAEDFHGILIPGGWMPDSLRRDPK-VLQLVRDFANHGKLVAAICHGGWIPISAGVYRG 124 Query: 122 VTVTSTPGIRDDMENAGAIWKDEAVVTDGHIISARRPPDLPPYGKAFCDALA 173 V VT +PGI+DD+ NAGAIW+D VV D H +S+RRP DLP +G A L+ Sbjct: 125 VRVTGSPGIQDDLINAGAIWEDTPVVVDRHFVSSRRPSDLPAFGSAILSVLS 176 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 278,025,446 Number of extensions: 11056513 Number of successful extensions: 22822 Number of sequences better than 1.0e-05: 184 Number of HSP's gapped: 22675 Number of HSP's successfully gapped: 187 Length of query: 175 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 58 Effective length of database: 439,570,995 Effective search space: 25495117710 Effective search space used: 25495117710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 121 (51.2 bits)