BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0025.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244107.1| transcriptional regulator involved in carbon ca... 431 e-119 ref|NP_981106.1| catabolite control protein A [Bacillus cereus A... 413 e-114 ref|NP_847127.1| catabolite control protein A [Bacillus anthraci... 412 e-114 ref|NP_390852.1| transcriptional regulator (Lacl family) [Bacill... 409 e-113 ref|NP_834378.1| Catabolite control protein A [Bacillus cereus A... 408 e-113 >ref|NP_244107.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] pir||A84055 transcription regulator involved in carbon catabolite control ccpA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06960.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] Length = 333 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/315 (64%), Positives = 247/315 (78%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAIERLGYRPNAVARGLASK+TTTVGVVIPDIS+ F Sbjct: 16 MATVSRVVNGNPNVKPATRKKVLEAIERLGYRPNAVARGLASKRTTTVGVVIPDISSIFF 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIA MY YNIILCN+D+ KEKEI +INTLLEKQVDG++FMGG +T+EH + F Sbjct: 76 AELARGIEDIATMYKYNIILCNSDQNKEKEIHLINTLLEKQVDGIVFMGGEITNEHAEEF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + + VP+VL AT D + PSV+ID++ AAFDAV LI GH I M+SG+L+DP NGY Sbjct: 136 KRAHVPVVLAATLDAEKEIPSVNIDYKQAAFDAVTYLIEKGHTSIGMVSGSLEDPVNGYQ 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 ++ GY++ALE G+ + E +V IG+Y Y+SG++AM F L+K+PTA+F ATDEMA+G I Sbjct: 196 KYAGYREALEERGVAFDESMVVIGDYTYDSGIDAMNVFTKLEKRPTAIFVATDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H QD GL +PDD +I DN R+A+MVRP L+TV QP+YD+GAV+MRLLTK M KE V Sbjct: 256 HGAQDHGLNIPDDIEVIGFDNTRLATMVRPTLSTVVQPIYDIGAVSMRLLTKYMNKEEVS 315 Query: 301 NPRVILPHETILRLS 315 V LPH R S Sbjct: 316 EHIVELPHRIEFRQS 330 >ref|NP_981106.1| catabolite control protein A [Bacillus cereus ATCC 10987] gb|AAS43714.1| catabolite control protein A [Bacillus cereus ATCC 10987] Length = 332 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/315 (62%), Positives = 239/315 (75%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAI+RLGYRPNAVARGLASKKTTTVGV+IPDISN+ + Sbjct: 16 MATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISNTFY 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIA MY YNIIL N+D+ KEKE ++NT+L KQVDG++FMG +TD H++ F Sbjct: 76 AELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGIVFMGEDITDIHVEEF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + S VPIVL A+ DEQ PSV+ID+ AA+DA+ I GH+ I +SG D A Sbjct: 136 KKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRIGFVSGPFIDKAGSAK 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 + QGYKKALE AGI Y E+LV G+Y Y+SG+EA + GL +KPTA+F ++DEMA+G I Sbjct: 196 KLQGYKKALEEAGISYDENLVIDGDYTYDSGIEAFEKLWGLDEKPTAIFVSSDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H+ QD GL VP D ++ DN R+A MVRP L+TV QPMYD+GAVAMRLLTK M KE VE Sbjct: 256 HAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAVAMRLLTKYMNKEKVE 315 Query: 301 NPRVILPHETILRLS 315 + VILPH R S Sbjct: 316 DHTVILPHRIQFRDS 330 >ref|NP_847127.1| catabolite control protein A [Bacillus anthracis str. Ames] gb|AAP28613.1| catabolite control protein A [Bacillus anthracis str. Ames] Length = 332 Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/315 (62%), Positives = 239/315 (75%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAI+RLGYRPNAVARGLASKKTTTVGV+IPDISN+ + Sbjct: 16 MATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISNTFY 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIA MY YNIIL N+D+ KEKE ++NT+L KQVDG++FMG +TD HI+ F Sbjct: 76 AELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGIVFMGEDITDIHIEEF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + S VPIVL A+ DEQ PSV+ID+ AA+DA+ I GH+ I +SG D A Sbjct: 136 KKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRIGFVSGPFIDKAGSAK 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 + QGYKKALE AGI Y E+LV G+Y Y+SG+EA + GL +KP+A+F ++DEMA+G I Sbjct: 196 KLQGYKKALEEAGISYDENLVIDGDYTYDSGIEAFEKLWGLDEKPSAIFVSSDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H+ QD GL VP D ++ DN R+A MVRP L+TV QPMYD+GAVAMRLLTK M KE VE Sbjct: 256 HAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAVAMRLLTKYMNKEKVE 315 Query: 301 NPRVILPHETILRLS 315 + VILPH R S Sbjct: 316 DHTVILPHRIQFRDS 330 >ref|NP_390852.1| transcriptional regulator (Lacl family) [Bacillus subtilis] sp|P25144|CCPA_BACSU Catabolite control protein A (Glucose-resistance amylase regulator) pir||S15318 transcription regulator for carbon catabolite control ccpA - Bacillus subtilis gb|AAA22501.1| glucose-resistance amylase regulator [Bacillus subtilis] gb|AAC00299.1| LacI-family transcription regulator [Bacillus subtilis] emb|CAB14952.1| transcriptional regulator (Lacl family) [Bacillus subtilis subsp. subtilis str. 168] Length = 334 Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/315 (61%), Positives = 242/315 (76%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAIERLGYRPNAVARGLASKKTTTVGV+IPDIS+ + Sbjct: 17 MATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFY 76 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 +E+ARGIEDIA MY YNIIL N+D+ EKE+ ++NT+L KQVDG++FMGG +TDEH+ F Sbjct: 77 SELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEF 136 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + S VPIVL A+ +EQ PSV ID+E A +DAV L+ GH +IA +SG + +P N Sbjct: 137 KRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSK 196 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 + QGYK+ALE A + + E V G+Y Y+SG+EA+++ + L KKPTA+ +ATDEMA+G I Sbjct: 197 KLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDEMALGII 256 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H+ QD+GL +P+D II DN R++ MVRP L+TV QP YD+GAVAMRLLTKLM KE VE Sbjct: 257 HAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVE 316 Query: 301 NPRVILPHETILRLS 315 V LPH LR S Sbjct: 317 EHIVELPHRIELRKS 331 >ref|NP_834378.1| Catabolite control protein A [Bacillus cereus ATCC 14579] gb|AAP11579.1| Catabolite control protein A [Bacillus cereus ATCC 14579] Length = 332 Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/315 (62%), Positives = 237/315 (75%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAI+RLGYRPNAVARGLASKKTTTVGV+IPDISN+ + Sbjct: 16 MATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISNTFY 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIA MY YNIIL N+D+ KEKE ++NT+L KQVDG++FMG +TD HI+ F Sbjct: 76 AELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGIVFMGEDITDIHIEEF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + S VPIVL A+ DEQ PSV+ID+ AA+DA+ I GH+ I +SG D A Sbjct: 136 KKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRIGFVSGPFIDKAGSAK 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 + QGYKKALE AGI Y E+LV G+Y Y+SG+EA + +KPTA+F ++DEMA+G I Sbjct: 196 KLQGYKKALEEAGISYDENLVIDGDYTYDSGIEAFEKLWSNDEKPTAIFVSSDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H+ QD GL VP D ++ DN R+A MVRP L+TV QPMYD+GAVAMRLLTK M KE VE Sbjct: 256 HAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAVAMRLLTKYMNKEKVE 315 Query: 301 NPRVILPHETILRLS 315 + VILPH R S Sbjct: 316 DHTVILPHRIQFRDS 330 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 439,096,821 Number of extensions: 16995708 Number of successful extensions: 50345 Number of sequences better than 1.0e-05: 1212 Number of HSP's gapped: 48757 Number of HSP's successfully gapped: 1213 Length of query: 321 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 195 Effective length of database: 415,135,104 Effective search space: 80951345280 Effective search space used: 80951345280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)