BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0005.p (135 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389378.1| similar to IMP dehydrogenase [Bacillus subtilis... 136 1e-31 ref|NP_830527.1| Inosine-5'-monophosphate dehydrogenase related ... 131 5e-30 ref|NP_977115.1| CBS domain protein [Bacillus cereus ATCC 10987]... 128 4e-29 ref|NP_843245.1| CBS domain protein [Bacillus anthracis str. Ame... 127 6e-29 ref|NP_654670.1| CBS, Domain in cystathionine beta-synthase and ... 121 5e-27 >ref|NP_389378.1| similar to IMP dehydrogenase [Bacillus subtilis] pir||G69873 yhcV-related protein ylbB - Bacillus subtilis emb|CAB11348.1| YlbB protein [Bacillus subtilis] emb|CAB13368.1| ylbB [Bacillus subtilis subsp. subtilis str. 168] Length = 150 Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/131 (54%), Positives = 89/131 (67%) Query: 1 MTAQPVCVTLQDNLYEVAVKMRDADTGVIPVVEADGETLIGIITDRDLVIRGYAEKHSGS 60 MTA T+ DN+YE AVKM+DA+ G IPVV+ DGETL+GI+TDRDLV+RG A K S Sbjct: 8 MTADLQYCTVLDNVYEAAVKMKDANVGAIPVVDEDGETLVGIVTDRDLVLRGIAIKKPNS 67 Query: 61 TAVETVMTKGITAVSESTSVDEAAELMASRQIRRIPVVNGKKLIGIVSLGDLAVKNIFAD 120 + MT+ +V E SVDE LMAS Q+RRIPV KKL GIV+LGDL++ + Sbjct: 68 QKITDAMTEKPVSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDLSLSEQTNE 127 Query: 121 EAAEALTDISQ 131 A AL+DIS+ Sbjct: 128 RAGSALSDISE 138 >ref|NP_830527.1| Inosine-5'-monophosphate dehydrogenase related protein [Bacillus cereus ATCC 14579] gb|AAP07728.1| Inosine-5'-monophosphate dehydrogenase related protein [Bacillus cereus ATCC 14579] Length = 139 Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 66/132 (50%), Positives = 95/132 (71%), Gaps = 2/132 (1%) Query: 1 MTAQPVCVTLQDNLYEVAVKMRDADTGVIPVVEADGETLIGIITDRDLVIRGYAEKHSGS 60 M+ V T DN+YE AVKM++ G+IPVVE E ++G++TDRDLV+RG AEKH GS Sbjct: 8 MSTHIVHCTPLDNVYEAAVKMKEESIGLIPVVE--NEQVVGLVTDRDLVVRGIAEKHPGS 65 Query: 61 TAVETVMTKGITAVSESTSVDEAAELMASRQIRRIPVVNGKKLIGIVSLGDLAVKNIFAD 120 + VMT I +VS + S+++A ELMA QIRR+PVV+ +LIG+++LGDLA++ D Sbjct: 66 NKITNVMTTNIISVSPNDSIEKATELMAQHQIRRLPVVDSGQLIGMLALGDLAIRESADD 125 Query: 121 EAAEALTDISQQ 132 +A AL++IS++ Sbjct: 126 QAGFALSEISER 137 >ref|NP_977115.1| CBS domain protein [Bacillus cereus ATCC 10987] gb|AAS39723.1| CBS domain protein [Bacillus cereus ATCC 10987] Length = 139 Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 2/132 (1%) Query: 1 MTAQPVCVTLQDNLYEVAVKMRDADTGVIPVVEADGETLIGIITDRDLVIRGYAEKHSGS 60 M+ V T DN+YE AVKM++ G+IPVVE E ++G++TDRDLV+RG AEKH GS Sbjct: 8 MSTHIVQCTPLDNVYEAAVKMKEESIGLIPVVE--NEQVVGLVTDRDLVVRGIAEKHPGS 65 Query: 61 TAVETVMTKGITAVSESTSVDEAAELMASRQIRRIPVVNGKKLIGIVSLGDLAVKNIFAD 120 + VMT I +VS +++A ELMA QIRR+PVV +L+G+++LGDLA+K D Sbjct: 66 NKITNVMTTNIVSVSPDDPIEKATELMAQYQIRRLPVVESGQLVGMLALGDLAIKESADD 125 Query: 121 EAAEALTDISQQ 132 +A AL++IS+ Sbjct: 126 QAGFALSEISEH 137 >ref|NP_843245.1| CBS domain protein [Bacillus anthracis str. Ames] gb|AAP24731.1| CBS domain protein [Bacillus anthracis str. Ames] Length = 139 Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 92/132 (69%), Gaps = 2/132 (1%) Query: 1 MTAQPVCVTLQDNLYEVAVKMRDADTGVIPVVEADGETLIGIITDRDLVIRGYAEKHSGS 60 M+ V T DN+YE AVKM++ G+IPVVE E ++G++TDRDLV+RG AEKH GS Sbjct: 8 MSTHIVQCTPLDNVYEAAVKMKEESIGLIPVVE--NEQVVGLVTDRDLVVRGIAEKHPGS 65 Query: 61 TAVETVMTKGITAVSESTSVDEAAELMASRQIRRIPVVNGKKLIGIVSLGDLAVKNIFAD 120 + VMT I +V+ S+++A ELMA QIRR+PVV +L+G+++LGDLA++ D Sbjct: 66 NKITNVMTTNIISVAPDDSLEKATELMAQHQIRRLPVVESDQLVGMLALGDLAIRESADD 125 Query: 121 EAAEALTDISQQ 132 +A AL++IS+ Sbjct: 126 QAGFALSEISEH 137 >ref|NP_654670.1| CBS, Domain in cystathionine beta-synthase and other proteins [Bacillus anthracis A2012] Length = 143 Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/126 (48%), Positives = 86/126 (68%), Gaps = 2/126 (1%) Query: 1 MTAQPVCVTLQDNLYEVAVKMRDADTGVIPVVEADGETLIGIITDRDLVIRGYAEKHSGS 60 M+ V T DN+YE AVKM++ G+IPVVE E ++G++TDRDLV+RG AEKH GS Sbjct: 8 MSTHIVQCTPLDNVYEAAVKMKEESIGLIPVVE--NEQVVGLVTDRDLVVRGIAEKHPGS 65 Query: 61 TAVETVMTKGITAVSESTSVDEAAELMASRQIRRIPVVNGKKLIGIVSLGDLAVKNIFAD 120 + VMT I +V+ S+++A ELMA QIRR+PVV +L+G+++LGDLA++ D Sbjct: 66 NKITNVMTTNIISVAPDDSLEKATELMAQHQIRRLPVVESDQLVGMLALGDLAIRESADD 125 Query: 121 EAAEAL 126 +A A Sbjct: 126 QAGFAF 131 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 168,014,054 Number of extensions: 5664369 Number of successful extensions: 20322 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 20557 Number of HSP's successfully gapped: 183 Length of query: 135 Length of database: 757,237,578 Length adjustment: 97 Effective length of query: 38 Effective length of database: 493,872,975 Effective search space: 18767173050 Effective search space used: 18767173050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)