BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0066.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243037.1| aromatic amino acid transporter [Bacillus halod... 429 e-118 ref|NP_694118.1| amino acid transporter [Oceanobacillus iheyensi... 335 2e-90 ref|NP_388193.1| similar to amino acid transporter [Bacillus sub... 314 3e-84 ref|NP_656986.1| aa_permeases, Amino acid permease [Bacillus ant... 217 5e-55 gb|EAJ02816.1| unknown [environmental sequence] 158 3e-37 >ref|NP_243037.1| aromatic amino acid transporter [Bacillus halodurans] pir||C83921 aromatic amino acid transporter BH2171 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05890.1| aromatic amino acid transporter [Bacillus halodurans] Length = 455 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/437 (51%), Positives = 298/437 (68%), Gaps = 4/437 (0%) Query: 24 VAGTIGTGYFLGSSLAISIGGPAVLLVYILAAAGTYVVFDALSRMTADHPEQGSFRSYAK 83 V IGTG+FLGSS+AI + GP+VLL +ILA GTY+VFDAL++MT+ PE+GSFRSYAK Sbjct: 22 VGCIIGTGFFLGSSIAIQMAGPSVLLAFILAGIGTYIVFDALAQMTSADPEKGSFRSYAK 81 Query: 84 KAFGSWAGFASGWVYWFSELLIMGSQLTALAIFSRFWFPAVPMWXXXXXXXXXXXXXXXX 143 KA+G WAGF SGWVYW SE+LIMGSQLTAL+IFSRFWFP VP+W Sbjct: 82 KAYGRWAGFTSGWVYWASEMLIMGSQLTALSIFSRFWFPDVPLWIFASGFAVLGIIVILT 141 Query: 144 XNKGFDRVENVLAVIKXXXXXXXXXXXXXXXXXXXXXXKYTPKLPLTAKALFPAGGIGLW 203 +KGFDR+EN+ AV+K +P T LFP G +GLW Sbjct: 142 GSKGFDRIENLFAVMKVAAIVMFIALAILALFGVFRAGPEGAGIPRTWNGLFPEGFLGLW 201 Query: 204 SAFLFAFYAYGGIEVLGIMSYRLNKPEEAPKAGKVMLLTLTAVYVISIGLAVTMVPLSAF 263 A +F FYA+GGIE++G+++ RL + +A K+G+ MLL LT +YV+S+GLA+ +VPL+ F Sbjct: 202 PALIFGFYAFGGIEIMGLLANRLEEKGDAAKSGRAMLLLLTFLYVVSVGLALILVPLNRF 261 Query: 264 NPKESPFVLALSSDHLAFVPHLFNGVLIIAGFSTMTASLYAVTSMMLTLAQEGDAPRLFS 323 N + SPF+ AL L V HLFNGVLIIAGFSTM ASL+AVTS+++TLA + DAP LF+ Sbjct: 262 NTETSPFITALKPYGLPIVSHLFNGVLIIAGFSTMVASLFAVTSILVTLAADKDAPNLFA 321 Query: 324 KKLKGKYPLYALCLISGGLIAAIVMSLLLPGKVYEYITTAAGLMLLYNWSFILLSSGKLL 383 KK+K K L A+ L + G+ ++V+SLL+PG++YEY TTAAGLMLLYNW FI+ SSGKL Sbjct: 322 KKVKNKIALPAIGLTAIGMALSVVLSLLIPGRIYEYFTTAAGLMLLYNWLFIIASSGKL- 380 Query: 384 EPVKWSGLKRWTGLVLIVLAVAGTLFHKLSRPGLYISL-LLVALIVGTDLIVHKVRSKAG 442 +++ KRW G + I+LAV GTLFH+ SRPG SL LV + + T ++ + + + G Sbjct: 381 --IQYRLTKRWIGTLFILLAVIGTLFHRTSRPGFLFSLGFLVVIGIVTLMMKKRWKQEEG 438 Query: 443 SNGKTASAWLVPQNKSQ 459 K S ++ + S+ Sbjct: 439 DGKKRPSIFVKLKPNSE 455 >ref|NP_694118.1| amino acid transporter [Oceanobacillus iheyensis HTE831] dbj|BAC15152.1| amino acid transporter [Oceanobacillus iheyensis HTE831] Length = 433 Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 258/405 (63%), Gaps = 7/405 (1%) Query: 24 VAGTIGTGYFLGSSLAISIGGPAVLLVYILAAAGTYVVFDALSRMTADHPEQGSFRSYAK 83 + TIGTGYFLGSS+AI G AVL +++ AA GTY V+++L++++ ++P++GSFR+YAK Sbjct: 18 IGCTIGTGYFLGSSIAIEQSGAAVLWLFLFAAIGTYFVYESLAKLSIEYPDKGSFRTYAK 77 Query: 84 KAFGSWAGFASGWVYWFSELLIMGSQLTALAIFSRFWFPAVPMWXXXXXXXXXXXXXXXX 143 KAFG WAGF++GWVY SELLIMGSQL AL IF+RFWFP +P+W Sbjct: 78 KAFGDWAGFSNGWVYCLSELLIMGSQLIALGIFTRFWFPNLPLWLCMVIFAVLGLAIILT 137 Query: 144 XNKGFDRVENVLAVIKXXXXXXXXXXXXXXXXXXXXXXKYTPKLPLTAKALFPAGGIGL- 202 GF+++EN+ ++K K T L +F + Sbjct: 138 GLAGFEKMENIFGIMK------ASAIIMFILVAVLLLVKGTESLINPIPHIFSGDLPSIW 191 Query: 203 WSAFLFAFYAYGGIEVLGIMSYRLNKPEEAPKAGKVMLLTLTAVYVISIGLAVTMVPLSA 262 W F++AFYA+GGIE++G+++ L +EA KAG+ MLL L ++Y+I++GLA+ + + Sbjct: 192 WGGFIYAFYAFGGIEIMGLVATDLKNKQEALKAGRWMLLGLGSIYIIALGLALAFIDETK 251 Query: 263 FNPKESPFVLALSSDHLAFVPHLFNGVLIIAGFSTMTASLYAVTSMMLTLAQEGDAPRLF 322 ESPF+ AL + + +FNGV IIAGFSTM ASLYA+ +++++L+++ AP Sbjct: 252 IIADESPFITALQPFDIPLIADVFNGVFIIAGFSTMVASLYAIITILVSLSEDHHAPAFL 311 Query: 323 SKKLKGKYPLYALCLISGGLIAAIVMSLLLPGKVYEYITTAAGLMLLYNWSFILLSSGKL 382 SKK + K P A + GL +I ++LLLP +++EYITTAAGLMLLYNW FIL S KL Sbjct: 312 SKKGRLKIPFPAFVCLIVGLFVSIFIALLLPDRIFEYITTAAGLMLLYNWLFILASFMKL 371 Query: 383 LEPVKWSGLKRWTGLVLIVLAVAGTLFHKLSRPGLYISLLLVALI 427 P +W+ +K VLI++AVA TLF ++SR G ++S+ + +I Sbjct: 372 QRPTRWNFMKPIIAGVLIIIAVATTLFAEISRIGFFVSIGFIIMI 416 >ref|NP_388193.1| similar to amino acid transporter [Bacillus subtilis] pir||C69758 amino acid transporter homolog ycgH - Bacillus subtilis dbj|BAA08945.1| homologue of aromatic amino acids transport protein of E. coli [Bacillus subtilis] emb|CAB12105.1| ycgH [Bacillus subtilis subsp. subtilis str. 168] Length = 377 Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/362 (44%), Positives = 226/362 (62%) Query: 75 QGSFRSYAKKAFGSWAGFASGWVYWFSELLIMGSQLTALAIFSRFWFPAVPMWXXXXXXX 134 +G +KAFG WAGF++GWVYW SE+LI GSQLTA+++F++ WFP VP+W Sbjct: 15 KGLVLCVCRKAFGKWAGFSNGWVYWTSEMLITGSQLTAISLFTKHWFPQVPLWVFASIYA 74 Query: 135 XXXXXXXXXXNKGFDRVENVLAVIKXXXXXXXXXXXXXXXXXXXXXXKYTPKLPLTAKAL 194 F++ ENVLAVIK + +P Sbjct: 75 VLGLLIIFTGLAVFEKTENVLAVIKTAAIFMFIVIAILALCGILSGGNHGIHVPNKTSEF 134 Query: 195 FPAGGIGLWSAFLFAFYAYGGIEVLGIMSYRLNKPEEAPKAGKVMLLTLTAVYVISIGLA 254 FP G +GLW+ ++AFYA+GGIEV+G+M+ L KPEEA K+GK+ML TL +Y+ISIGLA Sbjct: 135 FPYGAMGLWTGLIYAFYAFGGIEVMGLMAVHLKKPEEASKSGKLMLATLAIIYIISIGLA 194 Query: 255 VTMVPLSAFNPKESPFVLALSSDHLAFVPHLFNGVLIIAGFSTMTASLYAVTSMMLTLAQ 314 + +VPL F ++SPF+ +L +L + +FNG+ IIAGFST+ ASL+AVT+++ T+A Sbjct: 195 LLLVPLHTFTEQDSPFITSLKGYNLEIILDIFNGIFIIAGFSTLIASLFAVTTLLCTMAD 254 Query: 315 EGDAPRLFSKKLKGKYPLYALCLISGGLIAAIVMSLLLPGKVYEYITTAAGLMLLYNWSF 374 +GDAP+ F+ K K AL L GL+ +I++SL+LP +YE++TTAAGLMLLY W F Sbjct: 255 DGDAPKCFTLKEGKKICWPALGLTFAGLVLSIILSLVLPKNIYEHMTTAAGLMLLYTWLF 314 Query: 375 ILLSSGKLLEPVKWSGLKRWTGLVLIVLAVAGTLFHKLSRPGLYISLLLVALIVGTDLIV 434 IL SS KL +P + + +VLI AV+GTLF K SRPG ++S+ + +I +I Sbjct: 315 ILFSSKKLTDPEGMGKTQIYLAMVLIAAAVSGTLFEKSSRPGFFVSIGFLVIIAIVTMIY 374 Query: 435 HK 436 K Sbjct: 375 QK 376 >ref|NP_656986.1| aa_permeases, Amino acid permease [Bacillus anthracis A2012] Length = 227 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 116/222 (52%), Positives = 160/222 (72%) Query: 219 LGIMSYRLNKPEEAPKAGKVMLLTLTAVYVISIGLAVTMVPLSAFNPKESPFVLALSSDH 278 +G+M+ RL P++A K+G+VML+ LT +YV+S+GLA+ MVPL+ FN KESPFV+AL + Sbjct: 1 MGLMTIRLKDPKDAQKSGRVMLMILTIIYVVSLGLAIMMVPLNQFNTKESPFVIALQDYN 60 Query: 279 LAFVPHLFNGVLIIAGFSTMTASLYAVTSMMLTLAQEGDAPRLFSKKLKGKYPLYALCLI 338 L +V + N VLI+AGFST+ SL+AVTS+++ LA+EGDAP +F+KK K AL LI Sbjct: 61 LPYVSFILNVVLILAGFSTLVGSLFAVTSVLMNLAEEGDAPAMFAKKNKKNISFPALTLI 120 Query: 339 SGGLIAAIVMSLLLPGKVYEYITTAAGLMLLYNWSFILLSSGKLLEPVKWSGLKRWTGLV 398 GL A+I+ +LLLP +YEY+TTAAGLMLLY WS ILLS +L+ P W +K GL+ Sbjct: 121 IIGLGASILSALLLPKNIYEYVTTAAGLMLLYTWSLILLSFWRLMNPKGWMQIKSIIGLI 180 Query: 399 LIVLAVAGTLFHKLSRPGLYISLLLVALIVGTDLIVHKVRSK 440 +I LAV+GTL K +R G +SLL + +++ +IVH V K Sbjct: 181 MIALAVSGTLLQKTTRFGFLVSLLFLGIVIIVTIIVHFVSRK 222 >gb|EAJ02816.1| unknown [environmental sequence] Length = 458 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 112/425 (26%), Positives = 197/425 (46%), Gaps = 8/425 (1%) Query: 24 VAGTIGTGYFLGSSLAISIGGPAVLLVYILAAAGTYVVFDALSRMTADHPEQGSFRSYAK 83 + G IGTG FLG + I + GP+VLL Y + +++ L M + P GSF +A Sbjct: 24 LGGAIGTGLFLGIAQTIKMAGPSVLLGYAIGGFIAFLIMRQLGEMVVEEPVAGSFSHFAY 83 Query: 84 KAFGSWAGFASGWVYWFSELLIMGSQLTALAIFSRFWFPAVPMWXXXXXXXXXXXXXXXX 143 K +G +AGFASGW YW +L+ ++LTA+ I+ ++W+P +P W Sbjct: 84 KYWGDFAGFASGWNYWVLYVLVSMAELTAVGIYVQYWWPEIPTWMSAAFFFVLINAINLS 143 Query: 144 XNKGFDRVENVLAVIKXXXXXXXXXXXXXXXXXXXXXXKYTPKLPLTAKALFPAGGIGLW 203 K F +E A+IK + FP G GL Sbjct: 144 NVKAFGEMEFWFAIIKVVAIIGMIGFGGYLLASGNGGPDASVSNLWAQGGFFPNGISGLV 203 Query: 204 SAFLFAFYAYGGIEVLGIMSYRLNKPEEA-PKAGKVMLLTLTAVYVISIGLAVTMVPLSA 262 A +++GG+E++GI + + PE++ PKA ++ + Y+ ++ + +++ P Sbjct: 204 MAMAVIMFSFGGLELVGITAAEADNPEKSIPKATNQVIYRILIFYIGALAVLMSLYPWGK 263 Query: 263 FNPKESPFVLALSSDHLAFVPHLFNGVLIIAGFSTMTASLYAVTSMMLTLAQEGDAPRLF 322 SPFV+ + V + N V++ A S + +Y + M+ LA++G+ PR Sbjct: 264 VVEGGSPFVMIFHALDSNLVATVLNMVVLTAALSVYNSCVYCNSRMLFGLAKQGNGPRSL 323 Query: 323 SKKLKGKYPLYALCLISGGLIAAIVMSLLLPGKVYEYITTAAGLMLLYNWSFILLSSGKL 382 K K P+ A+ + + + ++++ L+PGK +E + L+ NW+ I L+ K Sbjct: 324 LKTNKSGVPVVAISVSAAATLLCVLINYLMPGKAFELLMALVVSALVINWAMISLAHLKF 383 Query: 383 LEPVKWSGL-----KRWT--GLVLIVLAVAGTLFHKLSRPGLYISLLLVALIVGTDLIVH 435 + + G+ W G L + +AG L PG+ IS+LL+ + + I + Sbjct: 384 RKSKQAEGVVPKFKAFWYPFGNYLCLAFMAGILVIMYLTPGIQISVLLIPVWIIVLAIGY 443 Query: 436 KVRSK 440 + + K Sbjct: 444 QFKQK 448 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 573,203,102 Number of extensions: 21475734 Number of successful extensions: 55719 Number of sequences better than 1.0e-05: 488 Number of HSP's gapped: 55229 Number of HSP's successfully gapped: 751 Length of query: 472 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 343 Effective length of database: 406,989,807 Effective search space: 139597503801 Effective search space used: 139597503801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)