BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0056.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242970.1| BH2104~unknown conserved protein in others [Bac... 223 2e-57 ref|NP_831588.1| Acetyltransferase [Bacillus cereus ATCC 14579] ... 219 2e-56 ref|NP_782410.1| acetyltransferase [Clostridium tetani E88] >gi|... 84 2e-15 ref|NP_831130.1| Acetyltransferase [Bacillus cereus ATCC 14579] ... 73 3e-12 ref|NP_977786.1| acetyltransferase, GNAT family [Bacillus cereus... 70 2e-11 >ref|NP_242970.1| BH2104~unknown conserved protein in others [Bacillus halodurans] pir||H83912 hypothetical protein BH2104 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05823.1| BH2104~unknown conserved protein in others [Bacillus halodurans] Length = 203 Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 143/201 (71%) Query: 1 MDHISITHGSPKSASGGRLLGMALDYMAYPVIGTADKALIENTLQKLWILGKNRFSHQYA 60 M HISI P+S G L MALDYM P+ G+ +K +I+ T +KLW NRFSHQYA Sbjct: 1 MSHISIVKADPQSQLGASLNQMALDYMVNPLAGSNNKNIIDATFRKLWQSKNNRFSHQYA 60 Query: 61 FEARLDNRTIGIVSCYPVSVMDKLAWPTARELIKLRKWKLIKHSLLHLQELWSMVSLNEG 120 FEA++D +T+G+++CYP+ V+ +LAWPT ++L RK +L +++ +L+ L+S+ ++ EG Sbjct: 61 FEAQIDGQTLGMITCYPIKVLKQLAWPTFKQLFSYRKLQLFYYNIRNLKLLYSITTMKEG 120 Query: 121 RADEYHIGALAALPESRGYGVGSRLIHYAEDKARLSNYGKCSLTVRQENFRAIKLYERLG 180 DE+H+G +A LPESRG GVGS+L+ +AE + L + KCSLTV++EN AIKLY+++G Sbjct: 121 EDDEFHVGTIATLPESRGLGVGSQLLQFAEAQTSLQGFSKCSLTVKKENKLAIKLYQKIG 180 Query: 181 YKITDSIEKKPYYLYRMVKPL 201 Y IT I K + LYRMVK + Sbjct: 181 YHITGEINKPAFSLYRMVKTI 201 >ref|NP_831588.1| Acetyltransferase [Bacillus cereus ATCC 14579] gb|AAP08789.1| Acetyltransferase [Bacillus cereus ATCC 14579] Length = 207 Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 98/199 (49%), Positives = 145/199 (72%) Query: 1 MDHISITHGSPKSASGGRLLGMALDYMAYPVIGTADKALIENTLQKLWILGKNRFSHQYA 60 M+ ISI +S G +L MAL+YM +P+ G+ +K ++ T KLW NRFSHQYA Sbjct: 1 MNKISIVKAVHQSMVGAQLNVMALEYMVFPLAGSEEKNTVDWTFCKLWRQENNRFSHQYA 60 Query: 61 FEARLDNRTIGIVSCYPVSVMDKLAWPTARELIKLRKWKLIKHSLLHLQELWSMVSLNEG 120 +EA++D +T+G+++CYP+ V+++LAWPT ++L+ RK + +++L+++ L+SM +L EG Sbjct: 61 YEAQMDGKTLGMITCYPIPVLNRLAWPTFKQLLSFRKLGFVVYNILNIKMLYSMFTLREG 120 Query: 121 RADEYHIGALAALPESRGYGVGSRLIHYAEDKARLSNYGKCSLTVRQENFRAIKLYERLG 180 DE+HIG +A LPESRG G+G+RLI +AE++A L + KCSLTV++EN AIKLY+R+G Sbjct: 121 EDDEFHIGTIALLPESRGLGIGTRLIEFAEEQASLQGFAKCSLTVKKENQLAIKLYQRIG 180 Query: 181 YKITDSIEKKPYYLYRMVK 199 Y+IT I K LYRMVK Sbjct: 181 YQITGEINKPKLSLYRMVK 199 >ref|NP_782410.1| acetyltransferase [Clostridium tetani E88] gb|AAO36347.1| acetyltransferase [Clostridium tetani E88] Length = 203 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 5/198 (2%) Query: 3 HISITHGSPKSAS-GGRLLGMALDYMAYPVIGTADKALIENTLQKLWILGKNRFSHQYAF 61 ++ I P+ A L+ MA D +A G+ DK + + NRFS++Y Sbjct: 6 YLVIRGAKPEDAEKAAELISMAWDELACIFAGSKDKKEVNKVISTFCKEKNNRFSYEYID 65 Query: 62 EARLDNRTIGIVSCYPVSVMDKLAWPTARELIKLRKWKLIKHSLLHLQELWSMVSLNEGR 121 + G+V +P KL P ++L L K K+ + +E+ M++ E + Sbjct: 66 VVESEGSIAGLVLAFPAEKEMKLNVPIMKKLPSLYKRKISTYK----EEVIPMLNSEEAK 121 Query: 122 ADEYHIGALAALPESRGYGVGSRLIHYAEDKARLSNYGKCSLTVRQENFRAIKLYERLGY 181 EY+I ++A P+ R G+G +L+ A +A + K SL V+ +N AIKLY+ GY Sbjct: 122 PGEYYIDSIAVHPDYRKKGLGKKLLMTARKRALKRGFKKVSLIVKPKNKGAIKLYKSSGY 181 Query: 182 KITDSIEKKPYYLYRMVK 199 + +++ YRMVK Sbjct: 182 NMAGTVDMPGTDYYRMVK 199 >ref|NP_831130.1| Acetyltransferase [Bacillus cereus ATCC 14579] gb|AAP08331.1| Acetyltransferase [Bacillus cereus ATCC 14579] Length = 192 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 17/185 (9%) Query: 19 LLGMALDYMAYPVIGTADKALIENTLQKLWILGKNRFSHQYAFEARLDNRTIGIVSCYPV 78 LL AL +A + G+ D+A + L+ + NR S++ F D +G++ Y Sbjct: 16 LLYNALHEIAEKITGSTDEAEVLLGLETWFSKENNRLSYENCFVYEQDESAVGVIVAYHG 75 Query: 79 SVMDKLAWPTARELIKLRKWKLIKHSLLHLQELWSMVSLNEGRADEYHIGALAALPESRG 138 S +L P I H L L + S+ E DEY+I L+ G Sbjct: 76 SEATQLDAP-------------IVHHLRELHKDESITLEKEAELDEYYIDTLSVSSAHGG 122 Query: 139 YGVGSRLIHYAEDKARLSNYGKCSLTVRQENFRAIKLYERLGYKITDSIE--KKPYYLYR 196 G+GS+LI AE A + K +L V EN RA LYE+LGYK + + +PY Sbjct: 123 KGIGSKLIEVAEIYATEKGHEKIALLVNLENTRAYSLYEKLGYKKDEIVMLVGEPY--AH 180 Query: 197 MVKPL 201 +VKPL Sbjct: 181 LVKPL 185 >ref|NP_977786.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] gb|AAS40394.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] Length = 192 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 85/186 (45%), Gaps = 19/186 (10%) Query: 19 LLGMALDYMAYPVIGTADKALIENTLQKLWILGKNRFSHQYAFEARLDNRTIGIVSCYPV 78 LL AL +A + G+ + + L+ + +NR S++ F D +G++ Y Sbjct: 16 LLYNALHEIAEKITGSTVETEVLLGLETWFSKERNRLSYENCFVYEQDGGAVGVIVAYHG 75 Query: 79 SVMDKLAWPTARELIKLRKWKLIKHSLLHLQELWSMVSLNEGRADEYHIGALAALPESRG 138 S KL P R L +L K + S+ E DEY+I L+ G Sbjct: 76 SEATKLDAPIVRHLRELHKDE-------------SITLEKEAELDEYYIDTLSVSSAYGG 122 Query: 139 YGVGSRLIHYAEDKARLSNYGKCSLTVRQENFRAIKLYERLGYKITDSI---EKKPYYLY 195 G+GS+LI AE A Y K +L V EN RA LYE+LGYK D I +PY Sbjct: 123 KGIGSKLIEAAEIHATEKEYEKIALLVNLENKRAYSLYEKLGYK-KDQIVMLVGEPY--A 179 Query: 196 RMVKPL 201 +VKPL Sbjct: 180 HLVKPL 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 310,916,810 Number of extensions: 12016381 Number of successful extensions: 25484 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 25515 Number of HSP's successfully gapped: 10 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)