BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0050.p
         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAJ13972.1| unknown [environmental sequence]                       100   8e-21
ref|ZP_00029883.1| hypothetical protein [Burkholderia fungorum]        99   4e-20
gb|EAK69894.1| unknown [environmental sequence]                        97   8e-20
ref|NP_792476.1| conserved hypothetical protein [Pseudomonas syr...    52   4e-06
gb|EAG23258.1| unknown [environmental sequence]                        52   6e-06

>gb|EAJ13972.1| unknown [environmental sequence]
          Length = 95

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 63/95 (66%)

Query: 1  MSAYVIFIREQSHNPEELRIYSQKAPDGLAGHPVTPLAVYGTHEVIEGPAIEGAAILEFP 60
          M+ Y++F  E + + +EL +Y  K    +AGHP+  LA YG  E +EG   EG  I+EFP
Sbjct: 1  MATYIVFTHESTQDQQELDLYQDKVGATIAGHPLKVLAAYGPQEALEGDGPEGVVIVEFP 60

Query: 61 SFEEAKVWYYSPAYQDAVQHRLRGGTYRGIIIEGV 95
          S + A+ WY SPAYQ  VQHR++GG +R +++EGV
Sbjct: 61 SADAARAWYDSPAYQAIVQHRVKGGRFRAVLVEGV 95


>ref|ZP_00029883.1| hypothetical protein [Burkholderia fungorum]
          Length = 98

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 61/96 (63%)

Query: 1  MSAYVIFIREQSHNPEELRIYSQKAPDGLAGHPVTPLAVYGTHEVIEGPAIEGAAILEFP 60
          M AYV+  RE++ +P +L  Y Q AP     HPV  LA +G  EV+EGPAIE   ILEF 
Sbjct: 1  MPAYVVITREKTLDPAKLEEYKQVAPATFEQHPVMMLASHGRREVVEGPAIEDILILEFT 60

Query: 61 SFEEAKVWYYSPAYQDAVQHRLRGGTYRGIIIEGVP 96
          S++EA  WY+SP YQ     RL+G  YR II EG+P
Sbjct: 61 SYDEALAWYHSPEYQAVSDTRLQGADYRIIITEGLP 96


>gb|EAK69894.1| unknown [environmental sequence]
          Length = 95

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%)

Query: 1  MSAYVIFIREQSHNPEELRIYSQKAPDGLAGHPVTPLAVYGTHEVIEGPAIEGAAILEFP 60
          M+ Y++F RE   + +E  +Y  K    LAGHPV  LA YG  E +EG   EG  I+EFP
Sbjct: 1  MATYIVFTRESMQDQQEFDLYQSKVGATLAGHPVKVLAAYGPQETLEGEGPEGVVIVEFP 60

Query: 61 SFEEAKVWYYSPAYQDAVQHRLRGGTYRGIIIEGV 95
          S E A  WY+ P YQ   QHR +G  YR +++EGV
Sbjct: 61 SKEAAHAWYHGPEYQAVAQHRFKGARYRAVLVEGV 95


>ref|NP_792476.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          str. DC3000]
 gb|AAO56171.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 96

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 14 NPEELRIYSQKAPDGLAGHPVTPLAVYGTHEVIEGPAI-EGAAILEFPSFEEAKVWYYSP 72
          +P++   Y+Q+AP          LA  G  E IEG A  +   I+EF S+E+A   Y+SP
Sbjct: 13 DPQQYSEYTQRAPAAFQLFGGKFLARGGRSEAIEGRATPQRTVIIEFESYEQAVACYHSP 72

Query: 73 AYQDAVQHRLRGGTYRGIIIEGVP 96
           YQ+A+ HR        +I+EG P
Sbjct: 73 QYQNAMSHRQGAAKAEIVIVEGQP 96


>gb|EAG23258.1| unknown [environmental sequence]
          Length = 95

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 1  MSAYVIFIREQSHNPEELRIYSQKAPDGLAGHPVTPLAVYGTHEVIEGPAIE-GAAILEF 59
          MS Y IF     +NPE  + Y  K            L   GT E IEG        +++F
Sbjct: 1  MSGYAIF-NLNVNNPENYKEYIDKVKPTAEKFGGEYLVRGGTSETIEGSWQHPRTVVIKF 59

Query: 60 PSFEEAKVWYYSPAYQDAVQHRLRGGTYRGIIIEGV 95
          PS+E+AK WY S  Y+   Q RL      G+IIEGV
Sbjct: 60 PSYEKAKEWYNSEEYKPIKQIRLDNADTNGMIIEGV 95


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 159,750,135
Number of extensions: 5906902
Number of successful extensions: 12954
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 13043
Number of HSP's successfully gapped: 8
Length of query: 102
Length of database: 757,237,578
Length adjustment: 69
Effective length of query: 33
Effective length of database: 569,895,747
Effective search space: 18806559651
Effective search space used: 18806559651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)