BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0047.p
         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242975.1| BH2109~unknown conserved protein [Bacillus halo...    51   7e-06

>ref|NP_242975.1| BH2109~unknown conserved protein [Bacillus halodurans]
 pir||E83913 hypothetical protein BH2109 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB05828.1| BH2109~unknown conserved protein [Bacillus halodurans]
          Length = 525

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)

Query: 1   MRSELKLLLETLPFAYEAILEAACDSGAIRLIERHNPDIIVTDAKLLISEASAL-ERVNA 59
           +R  LK L+E     YE   EA     A +L++   PD+++TD ++ + +   L ++VN 
Sbjct: 13  VRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFDGLQLIQKVNE 72

Query: 60  SQTHGT-IIVTSSY---EFILDAFCKGGMDTLLKPVAKEELKYAVLRAANGIRQE 110
           + +  T  I+ S Y    +   A   G +D +LKP+ ++EL+ A+++ A  + QE
Sbjct: 73  TLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAATLDQE 127


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 159,118,681
Number of extensions: 5158185
Number of successful extensions: 14244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14296
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 757,237,578
Length adjustment: 86
Effective length of query: 36
Effective length of database: 523,739,064
Effective search space: 18854606304
Effective search space used: 18854606304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)