BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0041.p
         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00000557.1| hypothetical protein [Ferroplasma acidarmanus]      96   2e-19
ref|NP_354484.1| AGR_C_2728p [Agrobacterium tumefaciens] >gi|253...    96   3e-19

>ref|ZP_00000557.1| hypothetical protein [Ferroplasma acidarmanus]
          Length = 151

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 4/142 (2%)

Query: 19  FLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWEDGKPVW 78
           FL  AK   Y+     +      + + +F+ G LKY D Y GT  F G+E ++++  P W
Sbjct: 9   FLTSAKLNGYSSGNAYSKGKIAGTLEFSFKDGKLKYADIYSGTVSFIGQETVFDNNIPQW 68

Query: 79  ALNYAGRVLADGFSG----DFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQWFS 134
            + Y G +L D +      DFL+ AL  +PE  P RG + +  + FTYK   +GD   F 
Sbjct: 69  GMVYYGAILDDSYDSKEVHDFLRSALRTMPESLPLRGKDVFSNNKFTYKNASEGDIGHFM 128

Query: 135 GYEEIWNGADKVYECRFHGGLI 156
           GYEEI    + +YE  + GG I
Sbjct: 129 GYEEIEEADNVIYEMHYSGGYI 150


>ref|NP_354484.1| AGR_C_2728p [Agrobacterium tumefaciens]
 pir||D97539 hypothetical protein AGR_C_2728 [imported] - Agrobacterium
           tumefaciens (strain C58, Cereon)
 gb|AAK87269.1| AGR_C_2728p [Agrobacterium tumefaciens str. C58 (Cereon)]
          Length = 162

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 6/146 (4%)

Query: 18  DFLLVAKKETYAGKGPETP-PSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWEDGKP 76
           +F++ AK  TY G G ++  P+R  SHDL +++G+  Y+D+Y G   F G+E +W  G  
Sbjct: 16  EFIVQAKSATYVGGGDKSATPTRQGSHDLGYREGDWHYVDSYFGGTDFIGQEVVWHQGTA 75

Query: 77  VWALNYAGRVL----ADGFS-GDFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQ 131
           VWA++Y GR+L     DG + G  ++ +L  +  +  F G  T+  +   Y  T  G+F+
Sbjct: 76  VWAMSYYGRILRPDMIDGTTAGMVIQRSLSTLYREGRFLGGFTHPVENLIYVDTNAGEFE 135

Query: 132 WFSGYEEIWNGADKVYECRFHGGLIQ 157
            F+G E I+ G  + Y   +HGG+I+
Sbjct: 136 SFTGVERIYRGHVETYRLDYHGGIIK 161


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 285,580,444
Number of extensions: 12904824
Number of successful extensions: 20546
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 20544
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 757,237,578
Length adjustment: 115
Effective length of query: 42
Effective length of database: 445,001,193
Effective search space: 18690050106
Effective search space used: 18690050106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)