BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0037.p
         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00102614.1| COG2076: Membrane transporters of cations and...    92   4e-18
ref|NP_241552.1| chaperonin [Bacillus halodurans] >gi|25321326|p...    91   6e-18
ref|NP_814151.1| sugE protein [Enterococcus faecalis V583] >gi|2...    84   1e-15
ref|NP_765432.1| SMR-type multidrug efflux transporter [Staphylo...    84   1e-15
ref|ZP_00183692.1| hypothetical protein Exigu090601 [Exiguobacte...    82   4e-15

>ref|ZP_00102614.1| COG2076: Membrane transporters of cations and cationic drugs
           [Desulfitobacterium hafniense]
          Length = 119

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 12  GGDSSMKNNSAWFKIAGAACLEVVWVIGLKHASVPWEWLITGLALLVSFYTIIAASRKLP 71
           GG  SM  N  W+K+  AA LEV WVIGL H+   W W  T +AL+VS Y +I A + LP
Sbjct: 2   GGKCSM--NKHWYKVFVAAFLEVFWVIGLAHSHDVWTWSGTVIALIVSNYLMITAGQVLP 59

Query: 72  VGTVYSVFVGLGTAGTVLADMLWFGEPFR 100
            GTVY+VFVGLGTAGTV++++ +F EPF+
Sbjct: 60  AGTVYAVFVGLGTAGTVISEIFFFEEPFQ 88


>ref|NP_241552.1| chaperonin [Bacillus halodurans]
 pir||F83735 chaperonin BH0686 [imported] - Bacillus halodurans (strain C-125)
 dbj|BAB04405.1| chaperonin [Bacillus halodurans]
          Length = 114

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 56/80 (70%)

Query: 20 NSAWFKIAGAACLEVVWVIGLKHASVPWEWLITGLALLVSFYTIIAASRKLPVGTVYSVF 79
          N  W  +  AA  EV WVIGLKHA  P EW  T LA+++S   +I A+++LPVGTVY+VF
Sbjct: 2  NKQWLMVVTAAVFEVGWVIGLKHADHPLEWGGTALAIVISLSLMILAAKQLPVGTVYAVF 61

Query: 80 VGLGTAGTVLADMLWFGEPF 99
          VGLGTAGTV A+ + F EP 
Sbjct: 62 VGLGTAGTVCAEAVLFAEPL 81


>ref|NP_814151.1| sugE protein [Enterococcus faecalis V583]
 gb|AAO80222.1| sugE protein [Enterococcus faecalis V583]
          Length = 111

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query: 20 NSAWFKIAGAACLEVVWVIGLKHASVPWEWLITGLALLVSFYTIIAASRKLPVGTVYSVF 79
          + AW K+   A  EV+WVIG+KH++  WE L T +A+ +SFY +I A  +LPVGT Y+VF
Sbjct: 2  SKAWLKVIFGAFCEVIWVIGMKHSTTWWEILGTVIAIFISFYALIKAGEELPVGTAYAVF 61

Query: 80 VGLGTAGTVLADMLWFGEPF 99
          VGLG+AGT++ D   F  P 
Sbjct: 62 VGLGSAGTIVTDHFLFHTPL 81


>ref|NP_765432.1| SMR-type multidrug efflux transporter [Staphylococcus epidermidis
           ATCC 12228]
 gb|AAO05518.1| SMR-type multidrug efflux transporter [Staphylococcus epidermidis
           ATCC 12228]
          Length = 134

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 6/94 (6%)

Query: 6   YFFGKRGGDSSMKNNSAWFKIAGAACLEVVWVIGLKHASVPWEWLITGLALLVSFYTIIA 65
           Y+F +R           W K+  A  +E++WV GL  A   + W+ T   + +SF+ +I 
Sbjct: 18  YYFNRRN------KRMQWLKVILAGFIEIIWVTGLDQAHSLFTWIFTLFFIALSFFLVID 71

Query: 66  ASRKLPVGTVYSVFVGLGTAGTVLADMLWFGEPF 99
           AS+ LPVGTVY+ FVG+G  GTVL DM++F +PF
Sbjct: 72  ASKHLPVGTVYAFFVGIGAVGTVLVDMIFFNQPF 105


>ref|ZP_00183692.1| hypothetical protein Exigu090601 [Exiguobacterium sp. 255-15]
          Length = 109

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 53/75 (70%)

Query: 23 WFKIAGAACLEVVWVIGLKHASVPWEWLITGLALLVSFYTIIAASRKLPVGTVYSVFVGL 82
          W  I  A+  EV WVIGLKHA+ P EW  T +++++SF  +I     LPVGTVY+VFVGL
Sbjct: 5  WLSIILASFFEVGWVIGLKHATTPLEWAATVVSIIISFTVLIKVCNHLPVGTVYAVFVGL 64

Query: 83 GTAGTVLADMLWFGE 97
          GTAGTV+ D++ F +
Sbjct: 65 GTAGTVVTDIVLFDQ 79


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 170,342,771
Number of extensions: 5835871
Number of successful extensions: 18719
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 18686
Number of HSP's successfully gapped: 73
Length of query: 130
Length of database: 757,237,578
Length adjustment: 93
Effective length of query: 37
Effective length of database: 504,733,371
Effective search space: 18675134727
Effective search space used: 18675134727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)