BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0023.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_809839.1| ABC-type transport, permease protein [Bacteroid... 328 1e-88 ref|NP_244079.1| BH3213~unknown conserved protein in others [Bac... 254 2e-66 ref|NP_623445.1| ABC-type transport system involved in multi-cop... 239 5e-62 ref|ZP_00019486.1| hypothetical protein [Chloroflexus aurantiacus] 178 1e-43 gb|EAB52748.1| unknown [environmental sequence] 132 1e-29 >ref|NP_809839.1| ABC-type transport, permease protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO76033.1| ABC-type transport, permease protein [Bacteroides thetaiotaomicron VPI-5482] Length = 318 Score = 328 bits (841), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 162/313 (51%), Positives = 213/313 (68%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C D ++FLFLK+FT Sbjct: 8 FWVIVHKEISDHVKSWRFLILIGIIALTCMGSLYTALTNIGAAIKPDDPDSSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 S TL P+F F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 ASDGTL--PSFVLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFVA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FFLI + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGIMLFVLGFLVMGFGLIAIGIPPTAEEFWRIVFFLITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RS+GPLTM+Q+ GAI VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSIGPLTMEQVQGAIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 >ref|NP_244079.1| BH3213~unknown conserved protein in others [Bacillus halodurans] pir||E84051 hypothetical protein BH3213 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06932.1| BH3213~unknown conserved protein in others [Bacillus halodurans] Length = 345 Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 139/332 (41%), Positives = 200/332 (60%), Gaps = 8/332 (2%) Query: 35 DSRQDGREGGSGSAFWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXA 94 + + +E + FW +V+KE D + SWR IL+GII+L C Sbjct: 17 KTSKQMKETVTKKVFWAIVRKEFTDFLSSWRIIILLGIILLTCVGSLYTAVTTIQDAINF 76 Query: 95 DQ-----GPATFLFLKMFTLSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLG 149 Q G ++LFL+MFT+S L P+F +F+S+LGPL+GI+LGFDA+NSER+KGTL Sbjct: 77 YQDGGRIGRNSYLFLQMFTISDGNL--PSFLSFVSFLGPLLGIALGFDAINSERSKGTLS 134 Query: 150 RLLSQPVYRDDFLKAKFTASLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLI 209 RL++QP+ RD + AKF A+L + PP+ +EF R++ FL Sbjct: 135 RLMAQPIPRDYVINAKFVAALFINIVLFIALGMLVMAFGILILGIPPSIDEFLRVISFLF 194 Query: 210 IATVYIGFWLNLSILFSIRFRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATV 269 + +YI FW+NL+ILFS+ FRQ ATSALS +A WLF +FYSMI+ L+ + + + + + Sbjct: 195 LILIYIAFWINLAILFSVIFRQQATSALSSMALWLFFLVFYSMIVKLLTN-SYLEEAGST 253 Query: 270 GEQLRHVHFILALNRLSPTELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXX 329 E + + +L + R SP LF E+ T LLSP +RS G +TM+Q+ G+I Sbjct: 254 NEYVSRYNAVLNIYRFSPNYLFQESTTVLLSPTVRSTGLMTMEQVTGSIASPLVLKESLL 313 Query: 330 XVWPQLTGLLAATALCFGLSYYLFMRQEVRSR 361 +WPQLTGL+AAT +CF ++Y LFMRQE+RS Sbjct: 314 LIWPQLTGLIAATLVCFAIAYVLFMRQEIRSN 345 >ref|NP_623445.1| ABC-type transport system involved in multi-copper enzyme maturation, permease component [Thermoanaerobacter tengcongensis] gb|AAM25049.1| ABC-type transport system involved in multi-copper enzyme maturation, permease component [Thermoanaerobacter tengcongensis] Length = 313 Score = 239 bits (611), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 182/312 (58%), Gaps = 7/312 (2%) Query: 51 VMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGP--ATFLFLKMFT 108 V+++KE+ DH+ SWRF IL+ +I L P +LFLK+FT Sbjct: 7 VLIKKEIADHIHSWRFNILLALIFLTALASIYTAGMAIRDAVSKADTPLGDLYLFLKVFT 66 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 +S L P+F TF+ +L PL+GI + FDA+N E N+ TL RL++QP+YRDD + +K+ A Sbjct: 67 VSDGRL--PSFITFVGFLAPLLGIGMAFDAINGEINRRTLVRLIAQPIYRDDVILSKWIA 124 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +LL+I PPT EE RI+ FL+ +Y+G WL+L ILFSI Sbjct: 125 ALLVITVFFLALGFFVMGLAILFFGIPPTFEEVMRIIVFLLATALYVGVWLSLGILFSIY 184 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQ ATS L+ IA WLF LFY MI++++ V Q++ ++L R+SPT Sbjct: 185 FRQPATSLLASIAVWLFFALFYDMIVNILVPIDTEGPAQIVFRQMQIHQYLL---RISPT 241 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 L+ E +TTLLSP +RSLGPLT+ Q+VGAI +WPQ+ GL+A + F + Sbjct: 242 TLYQEVVTTLLSPNVRSLGPLTVAQVVGAIPTPLSFDQSLLLIWPQIAGLVALSVFLFAI 301 Query: 349 SYYLFMRQEVRS 360 S+ LFMRQ++R Sbjct: 302 SFTLFMRQDIRH 313 >ref|ZP_00019486.1| hypothetical protein [Chloroflexus aurantiacus] Length = 342 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 169/327 (51%), Gaps = 9/327 (2%) Query: 36 SRQDGREGGSGSAFWVMVQKEMGDHVRSWRFTILIGIIVL-ACXXXXXXXXXXXXXXXXA 94 +RQ REG + W +V KEM D++ S R IL +I+L A Sbjct: 23 ARQQ-REGSPWTGLWAVVAKEMADYLTSVRMLILEALILLTAFGTVYAAAQNLRAGTGSG 81 Query: 95 DQGPATFLFLKMFTLSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQ 154 D+ FLFL++FT + L P F FL L PL+ I+L FD+VN E N+ TL ++L+Q Sbjct: 82 DE----FLFLRLFTTARDPL--PAFVGFLGLLVPLLAIALAFDSVNGEFNQRTLSKVLAQ 135 Query: 155 PVYRDDFLKAKFTASLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVY 214 P+YRD L KF A L +A PPT EE RI +FL++ Y Sbjct: 136 PIYRDALLLGKFLAGLGTLALALSAIWLLIIGMGLLQLGVPPTGEETLRIFWFLLVTIFY 195 Query: 215 IGFWLNLSILFSIRFRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLR 274 G WL L++LFSI FRQ AT+AL+ IA WLF T+F+ ++ SL+ + Sbjct: 196 GGIWLALAMLFSIIFRQPATAALAAIAVWLFFTVFWGILSSLLARTLQPVPPGDTQALIN 255 Query: 275 HVHFILALNRLSPTELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXV-WP 333 + L L R+SP LFSE +L+P +R+LG + QL AI + WP Sbjct: 256 QIQLELMLTRISPNTLFSEVALAMLNPTVRALGLILPIQLHNAIPGTPLPAMQSILLTWP 315 Query: 334 QLTGLLAATALCFGLSYYLFMRQEVRS 360 TGL+AAT + F + Y LF RQEVR+ Sbjct: 316 HATGLIAATIVLFAVGYILFQRQEVRA 342 >gb|EAB52748.1| unknown [environmental sequence] Length = 221 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 115/226 (50%), Gaps = 12/226 (5%) Query: 142 ERNKGTLGRLLSQPVYRDDFLKAKFTASLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEF 201 ER +GTL RLL+QP+YRD AK A++L ++ PPTPEE Sbjct: 1 ERTQGTLSRLLAQPIYRDSVFNAKLLAAILTLSLVVASVMMVVVGVTMFRLGIPPTPEEI 60 Query: 202 WRILFFLIIATVYIGFWLNLSILFSIRFRQAATSALSGIAAW----LFLTLFYSMIISLI 257 R++ F + +Y+ FWL LSI S+ FR TSAL+ I AW +TLF +I I Sbjct: 61 LRLVGFYSVTMMYLSFWLALSITTSVLFRNTVTSALASIGAWFSLGFLVTLFGGVIADRI 120 Query: 258 DSATAVSQTATVGEQLRHVHFILALNRLSPTELFSETITTLLSP-GIRSLGPLTMDQ--L 314 VS A +RH+ +NR+SP+ LFSE T LL P G R+L ++DQ L Sbjct: 121 VPEIKVSADA-----IRHLSIESWINRVSPSGLFSEATTILLDPMGGRALNFFSIDQSRL 175 Query: 315 VGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGLSYYLFMRQEVRS 360 G + +WP + LL AL LSY FMR+E+R+ Sbjct: 176 SGLLSTPVSAVQSLQLIWPHIVVLLGMVALLIALSYLKFMREEIRA 221 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 424,580,692 Number of extensions: 14437480 Number of successful extensions: 63125 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 63103 Number of HSP's successfully gapped: 15 Length of query: 362 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 235 Effective length of database: 412,420,005 Effective search space: 96918701175 Effective search space used: 96918701175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)