BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0018.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834812.1| Stage V sporulation protein AD [Bacillus cereus... 384 e-105 ref|NP_981543.1| stage V sporulation protein AD [Bacillus cereus... 383 e-105 ref|NP_653594.1| hypothetical protein predicted by GeneMark [Bac... 383 e-105 ref|NP_242435.1| stage V sporulation protein AD [Bacillus halodu... 377 e-103 ref|NP_692301.1| stage V sporulation protein AD [Oceanobacillus ... 355 7e-97 >ref|NP_834812.1| Stage V sporulation protein AD [Bacillus cereus ATCC 14579] gb|AAP12013.1| Stage V sporulation protein AD [Bacillus cereus ATCC 14579] Length = 338 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/337 (54%), Positives = 239/337 (70%), Gaps = 5/337 (1%) Query: 5 GSQTWQYTTRPVILGSSAVVGPEEGEGPLTSDFDFIYDSLKMGEKTWEKAERTLFEKASK 64 G +TW + +PVI+ + V GP E +G + DFD +++ L +G+ ++EKA + LFE+A Sbjct: 4 GHRTWVFENKPVIISTGVVGGPFEAKGNIPEDFDILHEDLWLGQDSYEKAHKILFEEACS 63 Query: 65 LALINASLEQEQLEFFVGGDLMNQIISSSFAARQLGVPYLGVFGACSTSMESLAIASMIV 124 A A L ++ ++F + GDL+NQI +SFA R LG PYLG+FGACSTSME LA+ + IV Sbjct: 64 RATEKAELRKDDIQFVLAGDLINQITPTSFACRTLGTPYLGLFGACSTSMEGLALGASIV 123 Query: 125 DSGGGKYALAGTSSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGSGCAVIGRDDGTSAGPH 184 ++ G KY L G SSHN VEKQFRYPTEYG QKPPTAQ+TVTG+G A++ T GP Sbjct: 124 NAKGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAIL---SDTGHGPR 180 Query: 185 VVMATMGRIMDLGLKDPFNMGXXXXXXXXDTITAHFRDTALSPGHYDLIVTGDLASVGLP 244 V AT+GR++D+GL DPFNMG DTI AH R+ + +YDLIVTGDL VG Sbjct: 181 VTSATIGRVIDMGLTDPFNMGGAMAPAAVDTIEAHLRERQIDASYYDLIVTGDLGHVGRE 240 Query: 245 IAKDLLAKEGIPMEQTDFKDCGLMIYDLDKQKYVIAGGSGCGCSATVTYGHILKRMKKGE 304 IA DLL K G + F+DCG++IY + + VIAG SG GCSATV YGH+L RMK+GE Sbjct: 241 IAYDLLHKHGTKVTSEQFQDCGIIIY--REGQPVIAGASGPGCSATVVYGHLLNRMKRGE 298 Query: 305 LKRVLIVATGALLSPLSYQQGETIPCVAHAVALEMGG 341 K++L+VATGALLSPL++QQ ETIPC+AHAV++E GG Sbjct: 299 FKKILVVATGALLSPLTFQQEETIPCIAHAVSIEFGG 335 >ref|NP_981543.1| stage V sporulation protein AD [Bacillus cereus ATCC 10987] gb|AAS44151.1| stage V sporulation protein AD [Bacillus cereus ATCC 10987] Length = 338 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/337 (54%), Positives = 239/337 (70%), Gaps = 5/337 (1%) Query: 5 GSQTWQYTTRPVILGSSAVVGPEEGEGPLTSDFDFIYDSLKMGEKTWEKAERTLFEKASK 64 G +TW + +PVI+ + V GP E +G + DFD +++ L +G+ ++EKA + LFE+A Sbjct: 4 GHRTWVFENKPVIISTGVVGGPFEAKGKIPEDFDILHEDLWLGQDSYEKAHKILFEEACS 63 Query: 65 LALINASLEQEQLEFFVGGDLMNQIISSSFAARQLGVPYLGVFGACSTSMESLAIASMIV 124 A A L ++ ++F + GDL+NQI +SFA R LG PYLG+FGACSTSME LA+ + IV Sbjct: 64 RATEKAELRKDDIQFVLAGDLINQITPTSFACRTLGTPYLGLFGACSTSMEGLALGASIV 123 Query: 125 DSGGGKYALAGTSSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGSGCAVIGRDDGTSAGPH 184 ++ G KY L G SSHN VEKQFRYPTEYG QKPPTAQ+TVTG+G A++ T GP Sbjct: 124 NAKGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAIL---SDTGHGPR 180 Query: 185 VVMATMGRIMDLGLKDPFNMGXXXXXXXXDTITAHFRDTALSPGHYDLIVTGDLASVGLP 244 V AT+G+++D+GL DPFNMG DTI AH R+ + +YDLIVTGDL VG Sbjct: 181 VTSATIGKVVDMGLTDPFNMGGAMAPAAVDTIEAHLRERQIDASYYDLIVTGDLGHVGRE 240 Query: 245 IAKDLLAKEGIPMEQTDFKDCGLMIYDLDKQKYVIAGGSGCGCSATVTYGHILKRMKKGE 304 IA DLL K G + F+DCGL+IY + + VIAG SG GCSATV YGH+L RMK+GE Sbjct: 241 IAYDLLHKHGTKVTSEQFQDCGLLIY--REGQPVIAGASGPGCSATVVYGHLLNRMKRGE 298 Query: 305 LKRVLIVATGALLSPLSYQQGETIPCVAHAVALEMGG 341 K++L+VATGALLSPL++QQ ETIPC+AHAV++E GG Sbjct: 299 FKKILVVATGALLSPLTFQQEETIPCIAHAVSIEFGG 335 >ref|NP_653594.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847549.1| stage V sporulation protein AD [Bacillus anthracis str. Ames] gb|AAP29035.1| stage V sporulation protein AD [Bacillus anthracis str. Ames] Length = 338 Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/337 (54%), Positives = 239/337 (70%), Gaps = 5/337 (1%) Query: 5 GSQTWQYTTRPVILGSSAVVGPEEGEGPLTSDFDFIYDSLKMGEKTWEKAERTLFEKASK 64 G +TW + +PVI+ + V GP E +G + DFD +++ L +G+ ++EKA + LFE+A Sbjct: 4 GHRTWVFENKPVIISTGVVGGPFEAKGKIPEDFDTLHEDLWLGQDSYEKAHKILFEEACS 63 Query: 65 LALINASLEQEQLEFFVGGDLMNQIISSSFAARQLGVPYLGVFGACSTSMESLAIASMIV 124 A A+L ++ ++F + GDL+NQI +SFA R LG PYLG+FGACSTSME LA+ + IV Sbjct: 64 RATEKANLRKDDIQFVLAGDLINQITPTSFACRTLGTPYLGLFGACSTSMEGLALGASIV 123 Query: 125 DSGGGKYALAGTSSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGSGCAVIGRDDGTSAGPH 184 ++ G KY L G SSHN VEKQFRYPTEYG QKPPTAQ+TVTG+G A++ T GP Sbjct: 124 NAKGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAIL---SDTGHGPR 180 Query: 185 VVMATMGRIMDLGLKDPFNMGXXXXXXXXDTITAHFRDTALSPGHYDLIVTGDLASVGLP 244 V AT+GR++D+GL DPFNMG DTI AH R+ + +YDLIVTGDL VG Sbjct: 181 VTSATIGRVVDMGLTDPFNMGGAMAPAAVDTIEAHLRERQIDASYYDLIVTGDLGHVGRE 240 Query: 245 IAKDLLAKEGIPMEQTDFKDCGLMIYDLDKQKYVIAGGSGCGCSATVTYGHILKRMKKGE 304 IA DLL K G + F+DCGL+IY + + VIAG SG GCSATV YGH+L RMK+GE Sbjct: 241 IAYDLLHKHGTKVTSEQFQDCGLLIY--REGQPVIAGASGPGCSATVVYGHLLNRMKRGE 298 Query: 305 LKRVLIVATGALLSPLSYQQGETIPCVAHAVALEMGG 341 ++L+VATGALLSPL++QQ ETIPC+AHAV++E GG Sbjct: 299 FNKILVVATGALLSPLTFQQEETIPCIAHAVSIEFGG 335 >ref|NP_242435.1| stage V sporulation protein AD [Bacillus halodurans] pir||A83846 stage V sporulation protein AD BH1569 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05288.1| stage V sporulation protein AD [Bacillus halodurans] Length = 338 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/337 (54%), Positives = 244/337 (72%), Gaps = 5/337 (1%) Query: 5 GSQTWQYTTRPVILGSSAVVGPEEGEGPLTSDFDFIYDSLKMGEKTWEKAERTLFEKASK 64 G QTW++ RPVIL S+A GP E GPL DFD +++ + +GE ++EKA++ L E+A+K Sbjct: 4 GRQTWEFENRPVILSSAATAGPFEANGPLADDFDILFEDMWLGEDSFEKAQKVLIEEAAK 63 Query: 65 LALINASLEQEQLEFFVGGDLMNQIISSSFAARQLGVPYLGVFGACSTSMESLAIASMIV 124 A+ A ++ + ++F GDL+NQ+ S+SFA R L +PY G+FGACSTSME LA+A+ ++ Sbjct: 64 TAIEKAGIQNDDIQFVFAGDLLNQMTSTSFACRSLCIPYFGLFGACSTSMEGLALAAFVI 123 Query: 125 DSGGGKYALAGTSSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGSGCAVIGRDDGTSAGPH 184 + G Y L G++SHN +EKQFRYPTEYG+QKPPTAQ+T T +G V+ + +GP Sbjct: 124 NHSGANYVLTGSTSHNAAIEKQFRYPTEYGAQKPPTAQWTATAAGVGVVAK---VGSGPV 180 Query: 185 VVMATMGRIMDLGLKDPFNMGXXXXXXXXDTITAHFRDTALSPGHYDLIVTGDLASVGLP 244 V AT+G+++D+GL DPFNMG DTI HF++ + P +YDLI TGDL +GLP Sbjct: 181 VTSATIGKVVDMGLSDPFNMGEAMAPAAADTIEMHFQERGVGPDYYDLIATGDLGKIGLP 240 Query: 245 IAKDLLAKEGIPMEQTDFKDCGLMIYDLDKQKYVIAGGSGCGCSATVTYGHILKRMKKGE 304 I K++L ++G DCGLMIY D Q V+AGGSG GCSA+VTYGH+L RMKKGE Sbjct: 241 IVKEMLEQKGYSFNDGQLNDCGLMIYR-DGQP-VLAGGSGSGCSASVTYGHLLNRMKKGE 298 Query: 305 LKRVLIVATGALLSPLSYQQGETIPCVAHAVALEMGG 341 + R+LIVATGALLSP+SYQQ ETIPC+AHAV++E GG Sbjct: 299 INRMLIVATGALLSPMSYQQNETIPCIAHAVSIEAGG 335 >ref|NP_692301.1| stage V sporulation protein AD [Oceanobacillus iheyensis HTE831] dbj|BAC13336.1| stage V sporulation protein AD [Oceanobacillus iheyensis HTE831] Length = 338 Score = 355 bits (912), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 166/339 (48%), Positives = 237/339 (69%), Gaps = 5/339 (1%) Query: 5 GSQTWQYTTRPVILGSSAVVGPEEGEGPLTSDFDFIYDSLKMGEKTWEKAERTLFEKASK 64 G +TW++ RP I+ + V GP E G + FD +++ + + + ++EKA++ + E+A + Sbjct: 4 GHRTWEFINRPSIITTGTVGGPFEANGSIPEAFDTLHEDMWIKQDSFEKAQQKMLEEACQ 63 Query: 65 LALINASLEQEQLEFFVGGDLMNQIISSSFAARQLGVPYLGVFGACSTSMESLAIASMIV 124 +A+ + +E+E +EFF+ GDL+NQI +SFAA+ +G PYLGVF AC+TSMESLA+A+ I+ Sbjct: 64 IAIKKSPIEKENVEFFIAGDLINQITPTSFAAKTVGTPYLGVFSACATSMESLALAATII 123 Query: 125 DSGGGKYALAGTSSHNCTVEKQFRYPTEYGSQKPPTAQYTVTGSGCAVIGRDDGTSAGPH 184 +SGG Y L G SSHN EKQFRYPTEYG QKPPTAQ+TVTG+GCA++ + GP+ Sbjct: 124 NSGGANYILTGASSHNAAAEKQFRYPTEYGGQKPPTAQWTVTGAGCALVAKQGN---GPY 180 Query: 185 VVMATMGRIMDLGLKDPFNMGXXXXXXXXDTITAHFRDTALSPGHYDLIVTGDLASVGLP 244 V AT+G+I+D+G+ DPFNMG DTI AH +D + P +YDLI+TGDL +G Sbjct: 181 VTSATIGKIVDMGMTDPFNMGGAMAAAAADTIEAHLQDRNIDPSYYDLIITGDLGHIGRE 240 Query: 245 IAKDLLAKEGIPMEQTDFKDCGLMIYDLDKQKYVIAGGSGCGCSATVTYGHILKRMKKGE 304 ++ D + + I + + DCGL IY + + V++G SG CSA VTYGH LK+M +G+ Sbjct: 241 VSLDYMHERNIDINPDQYVDCGLTIY--REGQPVLSGASGPACSAIVTYGHFLKQMAEGK 298 Query: 305 LKRVLIVATGALLSPLSYQQGETIPCVAHAVALEMGGDG 343 LKR+L+VATG+L SPLS Q + IPC+AHAV++E G D Sbjct: 299 LKRILMVATGSLHSPLSVNQKDPIPCIAHAVSIESGSDN 337 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 505,936,524 Number of extensions: 20019384 Number of successful extensions: 49855 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 49816 Number of HSP's successfully gapped: 16 Length of query: 344 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 218 Effective length of database: 415,135,104 Effective search space: 90499452672 Effective search space used: 90499452672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)