BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0009.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_658366.1| MMR_HSR1, GTPase of unknown function [Bacillus ... 390 e-107 ref|NP_390445.1| similar to hypothetical proteins [Bacillus subt... 389 e-107 ref|NP_242189.1| BH1323~unknown conserved protein [Bacillus halo... 378 e-103 ref|NP_606564.1| conserved hypothetical protein [Streptococcus p... 367 e-100 ref|NP_465016.1| similar to unknown proteins [Listeria monocytog... 365 e-100 >ref|NP_658366.1| MMR_HSR1, GTPase of unknown function [Bacillus anthracis A2012] ref|NP_846784.1| GTPase family protein [Bacillus anthracis str. Ames] ref|NP_980709.1| GTPase family protein [Bacillus cereus ATCC 10987] gb|AAP28270.1| GTPase family protein [Bacillus anthracis str. Ames] gb|AAS43317.1| GTPase family protein [Bacillus cereus ATCC 10987] Length = 368 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/365 (50%), Positives = 256/365 (70%), Gaps = 3/365 (0%) Query: 12 KCSGCGIKLQTTDKDLPGYIPGVAFEREPVICQRCFRIKNYNEASSVSVDQDEFLHLLSG 71 KC GCG+++QT DK+ GY P + E+E VICQRCFR+K+YNE VS+ D+FL +L+G Sbjct: 6 KCIGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCFRLKHYNEIQDVSLTDDDFLRILNG 65 Query: 72 VGEKNALVIHIVDLFDFEGSLISGLQRFVGNNPVILAVNKSDLLPKVTNWNKLRNWMQQR 131 +G+ +ALV+ IVD+FDF GS + GL RFVGNN V+L NK+DL+PK +K+++WM+ Sbjct: 66 IGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS 125 Query: 132 CKEHGLRTAEIVLCSAKRNQGFDRLLEAVSELRGQRDVYVVGATNVGKSTLINRLISDYS 191 K+ GL+ ++ L SA + QG L +A+ RG +DVYVVG TNVGKST INR+I ++S Sbjct: 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFS 185 Query: 192 D-LEQELTTSRYPGTTLDTVKIPLDDGHYIIDTPGIVYPWRYSELVERKDLGAVMPENPL 250 D E +TTS +PGTTLD + IPLD+ + DTPGI+ + + V ++ L + P + Sbjct: 186 DETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEI 245 Query: 251 KPAVYQLNEGQSLFFGGLGRFDFVKGERQSFTCYISGTLKIHRTKLERADSLYQEHRGEL 310 KP V+QLNE Q+LFF GL RFD+V G R++FTC+ S L IHRTKLE+AD LY+ H G+L Sbjct: 246 KPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 Query: 311 LSPPGTADMDKLPQWQRHEFRIGRNSQSDLFISGLGWIKVNGTGGAVVAVHVPKGIKVLT 370 LSPP +++ +P+ ++EF I R ++D+ SGLGW+ VN G +VA HVPKG+ V Sbjct: 306 LSPPTPEELENMPELVKYEFNI-REPKTDVVFSGLGWVTVNEPGAKIVA-HVPKGVSVSL 363 Query: 371 RPSLI 375 R SLI Sbjct: 364 RKSLI 368 >ref|NP_390445.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54453|YQEH_BACSU Hypothetical protein yqeH pir||D69951 conserved hypothetical protein yqeH - Bacillus subtilis dbj|BAA12444.1| YqeH [Bacillus subtilis] emb|CAB14509.1| yqeH [Bacillus subtilis subsp. subtilis str. 168] Length = 366 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/363 (50%), Positives = 250/363 (68%), Gaps = 2/363 (0%) Query: 13 CSGCGIKLQTTDKDLPGYIPGVAFEREPVICQRCFRIKNYNEASSVSVDQDEFLHLLSGV 72 C GCG+ +QT DK GY P + +E VICQRCFR+KNYNE VS+ D+FL++L G+ Sbjct: 6 CIGCGVTIQTEDKTGLGYAPPASLTKENVICQRCFRLKNYNEIQDVSLTDDDFLNILHGI 65 Query: 73 GEKNALVIHIVDLFDFEGSLISGLQRFVGNNPVILAVNKSDLLPKVTNWNKLRNWMQQRC 132 GE ++LV+ IVD+FDF GS I+GLQR VG NP++L NK+D+LPK +L WM++ Sbjct: 66 GETDSLVVKIVDIFDFNGSWINGLQRLVGGNPILLVGNKADILPKSLKRERLIQWMKREA 125 Query: 133 KEHGLRTAEIVLCSAKRNQGFDRLLEAVSELRGQRDVYVVGATNVGKSTLINRLISDYSD 192 KE GL+ ++ L SA R QG +++A+ R +DVYVVG TNVGKST INR+I + S Sbjct: 126 KELGLKPVDVFLVSAGRGQGIREVIDAIEHYRNGKDVYVVGCTNVGKSTFINRIIKEVSG 185 Query: 193 LEQELTTSRYPGTTLDTVKIPLDDGHYIIDTPGIVYPWRYSELVERKDLGAVMPENPLKP 252 E +TTS++PGTTLD ++IPLDDG + DTPGI+ + + V +KDL + P+ LKP Sbjct: 186 EEDIITTSQFPGTTLDAIEIPLDDGSSLYDTPGIINNHQMAHYVNKKDLKILSPKKELKP 245 Query: 253 AVYQLNEGQSLFFGGLGRFDFVKGERQSFTCYISGTLKIHRTKLERADSLYQEHRGELLS 312 +QLN+ Q+L+FGGL RFD+V GER F CY+ L IHRTKLE AD+LY++H GELL+ Sbjct: 246 RTFQLNDQQTLYFGGLARFDYVSGERSPFICYMPNELMIHRTKLENADALYEKHAGELLT 305 Query: 313 PPGTADMDKLPQWQRHEFRIGRNSQSDLFISGLGWIKVNGTGGAVVAVHVPKGIKVLTRP 372 PPG +MD+ P+ H F I ++ ++D+ SGLGW+ V+ V A + PKG+ V R Sbjct: 306 PPGKDEMDEFPELVAHTFTI-KDKKTDIVFSGLGWVTVHDADKKVTA-YAPKGVHVFVRR 363 Query: 373 SLI 375 SLI Sbjct: 364 SLI 366 >ref|NP_242189.1| BH1323~unknown conserved protein [Bacillus halodurans] pir||C83815 hypothetical protein BH1323 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05042.1| BH1323~unknown conserved protein [Bacillus halodurans] Length = 367 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/373 (50%), Positives = 254/373 (68%), Gaps = 7/373 (1%) Query: 4 MNETKRPEKCSGCGIKLQTTDKDLPGYIPGVAFEREPVICQRCFRIKNYNEASSVSVDQD 63 MNE R C+GCG+K+QT K++ GY P A +R+ +ICQRCFR+++YNE VS+ D Sbjct: 1 MNE--RDIICAGCGVKIQTESKEMLGYTPPSALKRDVIICQRCFRMQHYNEVQDVSLTDD 58 Query: 64 EFLHLLSGVGEKNALVIHIVDLFDFEGSLISGLQRFVGNNPVILAVNKSDLLPKVTNWNK 123 +FL +L +GE+ AL++ +VD+FDF GS + GL RFVG N V+L NK DLLPK N N+ Sbjct: 59 DFLKILHTIGERKALIVKLVDIFDFNGSWLPGLHRFVGGNDVLLIGNKVDLLPKSVNRNR 118 Query: 124 LRNWMQQRCKEHGLRTAEIVLCSAKRNQGFDRLLEAVSELRGQRDVYVVGATNVGKSTLI 183 + NWM++ K+ GL+ ++ L S ++ G + + LR +DVYVVGATNVGKST I Sbjct: 119 MINWMRKSAKDLGLKPIDVALISGEKGIGVKEVASLIDRLRKGKDVYVVGATNVGKSTFI 178 Query: 184 NRLISDY-SDLEQELTTSRYPGTTLDTVKIPLDDGHYIIDTPGIVYPWRYSELVERKDLG 242 N++I + D EQ +TTS +PGTTLD + IPLDDG + DTPGI+ + + V + +L Sbjct: 179 NKMIQIFGGDEEQMITTSHFPGTTLDMIDIPLDDGKTLYDTPGIINHHQMAHYVAKNELK 238 Query: 243 AVMPENPLKPAVYQLNEGQSLFFGGLGRFDFVKGERQSFTCYISGTLKIHRTKLERADSL 302 + P+ +KP V+QLNE Q+LFFGGL RFDFVKGER SF CY+S L IHRTKLE+AD L Sbjct: 239 LITPKKEIKPKVFQLNEEQTLFFGGLARFDFVKGERTSFVCYVSNDLFIHRTKLEKADEL 298 Query: 303 YQEHRGELLSPPGTADMDKLPQWQRHEFRIGRNSQSDLFISGLGWIKVNGTGGAVVAVHV 362 Y++ G++L+PP D LP +HEF I R + D+ ISGLGW+ VNGT V A + Sbjct: 299 YEKRLGDVLTPP--EDPQHLPSLVKHEFTI-RVQKVDVVISGLGWVTVNGTNVKVCA-YA 354 Query: 363 PKGIKVLTRPSLI 375 P+G+ V R SLI Sbjct: 355 PEGVGVSIRESLI 367 >ref|NP_606564.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gb|AAL97063.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 372 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/369 (47%), Positives = 244/369 (66%), Gaps = 8/369 (2%) Query: 13 CSGCGIKLQTTDKDLPGYIPGVAF----EREPVICQRCFRIKNYNEASSVSVDQDEFLHL 68 C GCGI++QT DK+ G+ P A E + CQRCFR+++YNE + V + DEFL L Sbjct: 6 CIGCGIQIQTEDKEKAGFTPAAALKKGMETGELYCQRCFRLRHYNEITDVHITDDEFLRL 65 Query: 69 LSGVGEKNALVIHIVDLFDFEGSLISGLQRFVGNNPVILAVNKSDLLPKVTNWNKLRNWM 128 L VG+ +ALV++++D+FDF GS+I GL RF+ N V+L NK D+LPK K+ W+ Sbjct: 66 LHEVGDSDALVVNVIDIFDFNGSIIPGLSRFISGNDVLLVGNKKDILPKSVKDGKVTQWL 125 Query: 129 QQRCKEHGLRTAEIVLCSAKRNQGFDRLLEAVSELRGQRDVYVVGATNVGKSTLINRLIS 188 +R E GLR +++L SA+ L+E ++ELR RDVYVVG TNVGKSTLIN +I Sbjct: 126 TERAHEEGLRPLDVMLTSAQNKYAIKDLIERINELRNGRDVYVVGVTNVGKSTLINAIIQ 185 Query: 189 DYSDLEQELTTSRYPGTTLDTVKIPLDDGHYIIDTPGIVYPWRYSELVERKDLGAVMPEN 248 + + + +TTSR+PGTTLD ++IPLDDG +I DTPGI++ + + + K+L V P+ Sbjct: 186 EITGDKDVITTSRFPGTTLDKIEIPLDDGSFIFDTPGIIHRHQMAHYLSPKELKIVSPKK 245 Query: 249 PLKPAVYQLNEGQSLFFGGLGRFDFVKGERQSFTCYISGTLKIHRTKLERADSLYQEHRG 308 +KP YQLN Q+LF GGL RFDF+ GERQ FT + L++HRTKL AD+ Y +H G Sbjct: 246 EIKPKTYQLNPEQTLFLGGLSRFDFINGERQGFTAFFDNQLELHRTKLAGADAFYDKHVG 305 Query: 309 ELLSPPGTADMDKLPQWQRHEFRIGRNSQSDLFISGLGWIKVNGT--GGAVVAVHVPKGI 366 LL+PPG ++ P+ RHEF I + + D+ SGLGWI+VNG A+VA P+G+ Sbjct: 306 TLLTPPGKKELTAFPKLVRHEFTI--DQKMDIVFSGLGWIRVNGQKDSKAIVAAWAPEGV 363 Query: 367 KVLTRPSLI 375 V+ R ++I Sbjct: 364 AVIVRKAII 372 >ref|NP_465016.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AC1261 hypothetical protein lmo1491 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99569.1| lmo1491 [Listeria monocytogenes] Length = 366 Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/364 (47%), Positives = 242/364 (66%), Gaps = 3/364 (0%) Query: 12 KCSGCGIKLQTTDKDLPGYIPGVAFEREPVICQRCFRIKNYNEASSVSVDQDEFLHLLSG 71 +C GCG +QT D D GY P + E VIC+RCFR+K+YNE V++ D+FL +L+ Sbjct: 6 RCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLKHYNEIQDVALTDDDFLRILNQ 65 Query: 72 VGEKNALVIHIVDLFDFEGSLISGLQRFVGNNPVILAVNKSDLLPKVTNWNKLRNWMQQR 131 + K AL++++VD+FDF+GS + GL RF G+NPV+L NK D+LPK +KL WM+ R Sbjct: 66 ISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLVGNKEDVLPKSLKRDKLTRWMRTR 125 Query: 132 CKEHGLRTAEIVLCSAKRNQGFDRLLEAVSELRGQRDVYVVGATNVGKSTLINRLISDYS 191 KE GL ++VL SA++ GFD LLE + ELR +DVYVVG TNVGKSTLINR+I S Sbjct: 126 AKEQGLAATDVVLVSAEKGHGFDTLLEKIDELRNGQDVYVVGCTNVGKSTLINRIIKQAS 185 Query: 192 DLEQELTTSRYPGTTLDTVKIPLDDGHYIIDTPGIVYPWRYSELVERKDLGAVMPENPLK 251 +TTS++PGTTLD ++IPL DG+ ++DTPGI+ + + ++ L A+ P+ +K Sbjct: 186 GENNVITTSQFPGTTLDKIEIPLADGNVLVDTPGIINHHQMAHFIDTTTLKAITPKKEVK 245 Query: 252 PAVYQLNEGQSLFFGGLGRFDFVKGERQSFTCYISGTLKIHRTKLERADSLYQEHRGELL 311 PAV+QLNE Q+LF G L R D+V G R+S Y+S L IHRTKLE+A++LY++ G +L Sbjct: 246 PAVFQLNEEQTLFLGALARLDYVSGGRKSLVVYVSNNLPIHRTKLEKAEALYEKQAGLVL 305 Query: 312 SPPGTADMDKLPQWQRHEFRIGRNSQSDLFISGLGWIKVNGTGGAVVAVHVPKGIKVLTR 371 PP DM LP+ + F + ++D+ SGLGW+ + GGA V VP+G+ R Sbjct: 306 QPPTEEDMKTLPKLVPYSFTV--KEKADIVFSGLGWVTI-PEGGAKVTAWVPEGVSATIR 362 Query: 372 PSLI 375 SL+ Sbjct: 363 TSLV 366 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 585,310,496 Number of extensions: 25182363 Number of successful extensions: 80423 Number of sequences better than 1.0e-05: 86 Number of HSP's gapped: 80548 Number of HSP's successfully gapped: 100 Length of query: 375 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 248 Effective length of database: 412,420,005 Effective search space: 102280161240 Effective search space used: 102280161240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)