BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0005.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_658362.1| HD, HD domain [Bacillus anthracis A2012] >gi|30... 196 3e-49 ref|NP_980705.1| conserved hypothetical protein TIGR00488 [Bacil... 194 9e-49 ref|NP_834040.1| hydrolase (HAD superfamily) [Bacillus cereus AT... 192 5e-48 ref|NP_390441.1| similar to hypothetical proteins [Bacillus subt... 191 6e-48 ref|NP_465012.1| similar to unknown proteins [Listeria monocytog... 173 2e-42 >ref|NP_658362.1| HD, HD domain [Bacillus anthracis A2012] ref|NP_846779.1| conserved hypothetical protein TIGR00488 [Bacillus anthracis str. Ames] gb|AAP28265.1| conserved hypothetical protein TIGR00488 [Bacillus anthracis str. Ames] Length = 189 Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 90/184 (48%), Positives = 127/184 (69%) Query: 3 LSREALIEAVSAQMPDKRWKHTLGVMETSVKLAERYGGDPVRAETAAILHDVAKYWPVER 62 ++RE + V QM +KR+ HT+GVMET+++LA+ YG D +AE AAI HD AK + Sbjct: 1 MNREEALHIVKQQMHEKRYIHTIGVMETAIELAKLYGVDEKKAEVAAIFHDYAKCRAISE 60 Query: 63 MKEIIEANGLSAELLSYDKQLWHAEVGAFVAGDEYGITDPEVLDAIRYHTSGRENMGLLE 122 M+EII++ L +LL Y+K+LWHA VGA++ E GITDPE+L AI YHTSG E M +L+ Sbjct: 61 MEEIIKSEDLPKDLLCYNKELWHAPVGAYLVEKEVGITDPEILQAITYHTSGHEKMTMLD 120 Query: 123 KIVCLADYIEPGRDFPGVDHIRKLSKASLEEGLLAGFDSTISLLLQKRQIVFPLTVLARN 182 K++ +ADYIEPGR FPGV+ RKL+ A + + LL TI L++K Q ++PLT N Sbjct: 121 KVIYVADYIEPGRKFPGVEEARKLAYADINQALLFALKRTIQFLMEKNQTIYPLTFQTYN 180 Query: 183 DLVR 186 +++ Sbjct: 181 AVIK 184 >ref|NP_980705.1| conserved hypothetical protein TIGR00488 [Bacillus cereus ATCC 10987] gb|AAS43313.1| conserved hypothetical protein TIGR00488 [Bacillus cereus ATCC 10987] Length = 189 Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 89/184 (48%), Positives = 127/184 (69%) Query: 3 LSREALIEAVSAQMPDKRWKHTLGVMETSVKLAERYGGDPVRAETAAILHDVAKYWPVER 62 ++RE + V QM +KR+ HT+GVMET+++LA+ YG D +AE AAI HD AK + Sbjct: 1 MNREKALHIVKQQMHEKRYIHTIGVMETAIELAKLYGVDEKKAEVAAIFHDYAKCRAISE 60 Query: 63 MKEIIEANGLSAELLSYDKQLWHAEVGAFVAGDEYGITDPEVLDAIRYHTSGRENMGLLE 122 M+EII++ L +LL Y+K+LWHA VGA++ E GITDPE+L AI YHTSG E M +L+ Sbjct: 61 MEEIIKSEDLPKDLLCYNKELWHAPVGAYLVEKEVGITDPEILQAITYHTSGHEKMTMLD 120 Query: 123 KIVCLADYIEPGRDFPGVDHIRKLSKASLEEGLLAGFDSTISLLLQKRQIVFPLTVLARN 182 K++ +ADYIEPGR FPGV+ RKL+ +++ LL TI L++K Q ++PLT N Sbjct: 121 KVIYVADYIEPGRKFPGVEEARKLAYTDIDQALLFALKRTIQFLMEKDQTIYPLTFQTYN 180 Query: 183 DLVR 186 +++ Sbjct: 181 AVIK 184 >ref|NP_834040.1| hydrolase (HAD superfamily) [Bacillus cereus ATCC 14579] gb|AAP11241.1| hydrolase (HAD superfamily) [Bacillus cereus ATCC 14579] Length = 192 Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 125/185 (67%) Query: 2 ALSREALIEAVSAQMPDKRWKHTLGVMETSVKLAERYGGDPVRAETAAILHDVAKYWPVE 61 ++RE + V QM +KR+ HT+GVMET+++LA+ YG D +AE AAI HD AK + Sbjct: 3 CMNRENALHIVKQQMHEKRYIHTIGVMETAIELAKLYGVDEKKAEMAAIFHDYAKCRAIS 62 Query: 62 RMKEIIEANGLSAELLSYDKQLWHAEVGAFVAGDEYGITDPEVLDAIRYHTSGRENMGLL 121 M+EII+ L +LL Y+K+LWHA VGA++ E GITD E+L AI YHTSG ENM +L Sbjct: 63 EMEEIIKREDLPKDLLCYNKELWHAPVGAYLVEKEVGITDSEILQAITYHTSGHENMTML 122 Query: 122 EKIVCLADYIEPGRDFPGVDHIRKLSKASLEEGLLAGFDSTISLLLQKRQIVFPLTVLAR 181 +K++ +ADYIEPGR FPGV+ RKL+ + + LL TI L++K Q ++PLT Sbjct: 123 DKVIYVADYIEPGRKFPGVEEARKLAYTDINQALLFALKRTIQFLMEKDQTIYPLTFQTY 182 Query: 182 NDLVR 186 N +++ Sbjct: 183 NAVIK 187 >ref|NP_390441.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54456|YQEK_BACSU Hypothetical protein yqeK pir||G69951 conserved hypothetical protein yqeK - Bacillus subtilis dbj|BAA12448.1| YqeK [Bacillus subtilis] emb|CAB14505.1| yqeK [Bacillus subtilis subsp. subtilis str. 168] Length = 186 Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 125/183 (68%) Query: 3 LSREALIEAVSAQMPDKRWKHTLGVMETSVKLAERYGGDPVRAETAAILHDVAKYWPVER 62 ++RE + V Q+ + R+ HT+GVM T+++LAER+G D +AE AAI HD AK+ P E Sbjct: 1 MNREEALACVKQQLTEHRYIHTVGVMNTAIELAERFGADSKKAEIAAIFHDYAKFRPKEE 60 Query: 63 MKEIIEANGLSAELLSYDKQLWHAEVGAFVAGDEYGITDPEVLDAIRYHTSGRENMGLLE 122 MK+II + A LL ++ +LWHA VGA++ E G+ D ++LDAIRYHTSGR M LLE Sbjct: 61 MKQIIAREKMPAHLLDHNPELWHAPVGAYLVQREAGVQDEDILDAIRYHTSGRPGMTLLE 120 Query: 123 KIVCLADYIEPGRDFPGVDHIRKLSKASLEEGLLAGFDSTISLLLQKRQIVFPLTVLARN 182 K++ +ADYIEP R FPGVD +RKL++ L + L+ +T+ L++K Q VFP T L N Sbjct: 121 KVIYVADYIEPNRAFPGVDEVRKLAETDLNQALIQSIKNTMVFLMKKNQPVFPDTFLTYN 180 Query: 183 DLV 185 LV Sbjct: 181 WLV 183 >ref|NP_465012.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AG1260 hypothetical protein lmo1487 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99565.1| lmo1487 [Listeria monocytogenes] Length = 191 Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 123/185 (66%) Query: 3 LSREALIEAVSAQMPDKRWKHTLGVMETSVKLAERYGGDPVRAETAAILHDVAKYWPVER 62 + R +++ V A MP+ R+KHTLGV + +V+LAE Y D +A A+LHD AKY+ ++ Sbjct: 1 MERNEVLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKARITALLHDYAKYYDDDK 60 Query: 63 MKEIIEANGLSAELLSYDKQLWHAEVGAFVAGDEYGITDPEVLDAIRYHTSGRENMGLLE 122 ++IIE G LLS+ LWHA VGA++A E+GITD E+L+AIR HT+G M + Sbjct: 61 ARKIIEDEGYDPRLLSFHHSLWHAPVGAYLAEKEFGITDTEILEAIRLHTTGSATMSDFD 120 Query: 123 KIVCLADYIEPGRDFPGVDHIRKLSKASLEEGLLAGFDSTISLLLQKRQIVFPLTVLARN 182 K++ LADY E GR FPGV R+L+ SL+E +L +TI+ L++K+Q+VFP T+ A N Sbjct: 121 KLIYLADYTEQGRTFPGVYKARRLALKSLDEAMLFALSNTITHLVKKQQLVFPDTLDAYN 180 Query: 183 DLVRI 187 V + Sbjct: 181 YFVNL 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 271,730,584 Number of extensions: 10528182 Number of successful extensions: 26327 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 26305 Number of HSP's successfully gapped: 59 Length of query: 192 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 73 Effective length of database: 434,140,797 Effective search space: 31692278181 Effective search space used: 31692278181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)