BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0004.p (115 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242194.1| BH1328~unknown conserved protein [Bacillus halo... 128 4e-29 ref|NP_470857.1| lin1521 [Listeria innocua] >gi|16803526|ref|NP_... 123 1e-27 ref|NP_692904.1| hypothetical protein OB1983 [Oceanobacillus ihe... 120 8e-27 ref|NP_834039.1| iojap protein family [Bacillus cereus ATCC 1457... 120 1e-26 ref|NP_980704.1| iojap-related protein [Bacillus cereus ATCC 109... 120 1e-26 >ref|NP_242194.1| BH1328~unknown conserved protein [Bacillus halodurans] pir||H83815 hypothetical protein BH1328 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05047.1| BH1328~unknown conserved protein [Bacillus halodurans] Length = 117 Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 56/91 (61%), Positives = 74/91 (81%) Query: 23 NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82 VVAL+++ +S I+D+F+ICHGNS+ QVQAIA E++KV E G I+ +EG + ARWVL+ Sbjct: 21 QVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI 80 Query: 83 DLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113 DLGDV+VHVFH+DER YYN+E+LW DA VE Sbjct: 81 DLGDVVVHVFHKDERAYYNLEKLWGDAPTVE 111 >ref|NP_470857.1| lin1521 [Listeria innocua] ref|NP_465011.1| lmo1486 [Listeria monocytogenes EGD-e] pir||AF1260 hypothetical protein lmo1486 [imported] - Listeria monocytogenes (strain EGD-e) pir||AH1622 hypothetical protein lin1521 [imported] - Listeria innocua (strain Clip11262) emb|CAC99564.1| lmo1486 [Listeria monocytogenes] emb|CAC96752.1| lin1521 [Listeria innocua] Length = 118 Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 51/91 (56%), Positives = 74/91 (81%) Query: 23 NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82 +++ALD++ +S +DYFVICHGNSD QVQAIA E+++ E ++ +EG DAA+W+L+ Sbjct: 21 DILALDMKGLSSFADYFVICHGNSDKQVQAIAREIKEKALENQVDVKRLEGFDAAQWILI 80 Query: 83 DLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113 DLGDVI+HVFH++ER YYN+E+LW DA +V+ Sbjct: 81 DLGDVIIHVFHKEERSYYNLEKLWGDAPLVD 111 >ref|NP_692904.1| hypothetical protein OB1983 [Oceanobacillus iheyensis HTE831] dbj|BAC13939.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 118 Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 52/90 (57%), Positives = 71/90 (78%) Query: 23 NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82 N+VALD+ VS ++DYF+ICHG+++ QVQAIA V++ V E G I+ IEG D ARWVL+ Sbjct: 21 NIVALDMNEVSLVADYFLICHGSNERQVQAIARAVKETVEEKGLSIKRIEGFDQARWVLV 80 Query: 83 DLGDVIVHVFHRDEREYYNIERLWSDAKVV 112 D+GD++ HVFH+DER YYN+E+LW DA + Sbjct: 81 DIGDIVCHVFHKDERYYYNLEKLWGDANQI 110 >ref|NP_834039.1| iojap protein family [Bacillus cereus ATCC 14579] gb|AAP11240.1| iojap protein family [Bacillus cereus ATCC 14579] Length = 118 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 69/86 (80%) Query: 23 NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82 ++V L+++ +SPI+DYF+ICHGNSD QVQAIA E++ HE ++ +EG D ARWVL+ Sbjct: 21 DMVVLNMQGISPIADYFIICHGNSDKQVQAIAREIKSKAHEFQIDVQRMEGFDEARWVLV 80 Query: 83 DLGDVIVHVFHRDEREYYNIERLWSD 108 DLGDV+ HVFH+DER +YN+ERLW D Sbjct: 81 DLGDVVAHVFHKDERNHYNLERLWGD 106 >ref|NP_980704.1| iojap-related protein [Bacillus cereus ATCC 10987] gb|AAS43312.1| iojap-related protein [Bacillus cereus ATCC 10987] Length = 118 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 69/86 (80%) Query: 23 NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82 ++V L+++ +SPI+DYF+ICHGNSD QVQAIA E++ HE ++ +EG D ARWVL+ Sbjct: 21 DMVVLNMQGISPIADYFIICHGNSDKQVQAIAREIKAKAHEFQIDVQRMEGFDEARWVLV 80 Query: 83 DLGDVIVHVFHRDEREYYNIERLWSD 108 DLGDV+ HVFH+DER +YN+ERLW D Sbjct: 81 DLGDVVAHVFHKDERNHYNLERLWGD 106 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 138,871,402 Number of extensions: 4550250 Number of successful extensions: 10588 Number of sequences better than 1.0e-05: 420 Number of HSP's gapped: 10502 Number of HSP's successfully gapped: 420 Length of query: 115 Length of database: 757,237,578 Length adjustment: 80 Effective length of query: 35 Effective length of database: 540,029,658 Effective search space: 18901038030 Effective search space used: 18901038030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)