BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0054.p (132 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_232776.1| conserved hypothetical protein [Vibrio cholerae... 106 2e-22 gb|EAK12977.1| unknown [environmental sequence] 103 1e-21 gb|AAB81979.1| unknown [Vibrio cholerae] 103 2e-21 ref|NP_786859.1| acetyltransferase (putative) [Lactobacillus pla... 72 3e-12 ref|ZP_00063299.1| COG0454: Histone acetyltransferase HPA2 and r... 60 2e-08 >ref|NP_232776.1| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] pir||C82466 conserved hypothetical protein VCA0382 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gb|AAF96288.1| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961] Length = 141 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 83/123 (67%), Gaps = 2/123 (1%) Query: 7 LRQIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRFIHNL 66 LR++YLDSRR SF W AD ++DFD+D+ E+I L+E V+GF S++ P+ FIH+L Sbjct: 14 LRKLYLDSRRDSFPWLKADSFRIEDFDRDSQGERIWLSEVLGNVVGFISIWEPDNFIHHL 73 Query: 67 FVHPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKAVVE-EGEPGAR 125 +V G+GVG +LL A + G ++LKC+ +N KAL+FY+ +G++ V + + E G Sbjct: 74 YVATEYQGQGVGSMLLNGAKMKYGN-LSLKCMVQNQKALNFYSSQGFEIVSQVDDELGGY 132 Query: 126 YWV 128 Y++ Sbjct: 133 YYM 135 >gb|EAK12977.1| unknown [environmental sequence] Length = 140 Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 68/118 (57%) Query: 3 DYPQLRQIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRF 62 D PQL Q++L RR +FHW + L+DFD+ T EQI +AE+ GF S++ F Sbjct: 9 DIPQLAQLFLKGRRQTFHWVDPAHFRLEDFDEQTRGEQIWVAEQGGAPCGFVSIWGDESF 68 Query: 63 IHNLFVHPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKAVVEEG 120 +H+L+V G+GVG LL +A P +LK + N AL+FY++ GW+ E G Sbjct: 69 VHHLYVSADWHGQGVGRALLSHGLASFQKPASLKVATHNTAALAFYHRLGWQNTAETG 126 >gb|AAB81979.1| unknown [Vibrio cholerae] Length = 141 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 81/123 (65%), Gaps = 2/123 (1%) Query: 7 LRQIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRFIHNL 66 LR++YLDSRR SF W AD ++DFD+D+ E+I L+E V GF S++ P+ FIH+L Sbjct: 14 LRKLYLDSRRDSFPWLKADSFRIEDFDRDSQGERIWLSEVLGNVAGFISIWEPDNFIHHL 73 Query: 67 FVHPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKAVVE-EGEPGAR 125 +V G+GVG +LL A + G ++LKC+ +N KAL+FY +G++ V + + E G Sbjct: 74 YVATEYQGQGVGSMLLNGAKMKYGN-LSLKCMVQNQKALNFYLSQGFEIVSKVDDELGGY 132 Query: 126 YWV 128 Y++ Sbjct: 133 YYM 135 >ref|NP_786859.1| acetyltransferase (putative) [Lactobacillus plantarum WCFS1] emb|CAD65737.1| acetyltransferase (putative) [Lactobacillus plantarum WCFS1] Length = 160 Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 9 QIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRFIHNLFV 68 +IYL R+ F W + L DF++D+ E +L+A + Q GF SLY FIH LFV Sbjct: 20 EIYLVDRQQDFPWVTDPQ--LQDFNEDSRGEFVLVAWIDGQRAGFCSLYRLANFIHLLFV 77 Query: 69 HPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKAVVEEGE 121 P VG+ LL P+TLKCV N AL FY + G++ V + + Sbjct: 78 APDFRHLKVGERLLTEMRQYATEPLTLKCVMANENALRFYAQVGFRIVKADAD 130 >ref|ZP_00063299.1| COG0454: Histone acetyltransferase HPA2 and related acetyltransferases [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 187 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 3 DYPQLRQIYLDSRRGSFHWANADEMTLDDFDQDTSEEQILLAEENAQVLGFASLYVPNRF 62 D L +IYL +R+ +F W + L+DF + + E + +A N +++GFASL + F Sbjct: 58 DSEALARIYLGARQHNFSWVKHPK--LEDFARVSHGEVVEVAIINQEIVGFASLSERDSF 115 Query: 63 IHNLFVHPTASGKGVGDLLLKRAVAELGTPVTLKCVSENHKALSFYNKRGWKA 115 +H LF+ +G G+G LL A + + LK V+ N A FY + G+ A Sbjct: 116 LHLLFIKEGWNGCGIGAKLLDWARNQATQALELKVVTANVAAQRFYEREGFLA 168 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 203,684,542 Number of extensions: 7657837 Number of successful extensions: 23824 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 23888 Number of HSP's successfully gapped: 8 Length of query: 132 Length of database: 757,237,578 Length adjustment: 95 Effective length of query: 37 Effective length of database: 499,303,173 Effective search space: 18474217401 Effective search space used: 18474217401 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)