BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0039.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_396590.1| hypothetical protein AGR_pTi_140 [Agrobacterium... 232 5e-60 ref|ZP_00187340.1| hypothetical protein Rxyl170101 [Rubrobacter ... 150 3e-35 gb|AAP57766.1| acyl homoserine lactone degrading enzyme [Arthrob... 142 5e-33 ref|NP_660009.1| unknown [Rhizobium etli] >gi|21467359|gb|AAM550... 116 6e-25 ref|NP_929495.1| hypothetical protein [Photorhabdus luminescens ... 111 2e-23 >ref|NP_396590.1| hypothetical protein AGR_pTi_140 [Agrobacterium tumefaciens str. C58 (Cereon)] ref|NP_536189.1| Zn-dependent hydrolases [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AE3236 Zn-dependent hydrolases [imported] - Agrobacterium tumefaciens (strain C58, Dupont) plasmid Ti gb|AAK91031.1| AGR_pTi_140p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL46307.1| Zn-dependent hydrolases [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 276 Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 103/249 (41%), Positives = 151/249 (60%) Query: 6 TINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPWVASEE 65 T P ++ ++ P+ LI + +L+DT C+P MG GRW +QL++P++ + E Sbjct: 28 TPQKPTVSSRLIDIPVSAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASE 87 Query: 66 CYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTYARNEK 125 C L RL QL + P++I VV SHLH DHAGC+E F + +I HEDEF A++ +A + Sbjct: 88 CNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDH 147 Query: 126 EGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEMPETGG 185 Y+ DI+AW+ W + E +L G+ +LNFG+GHA GMLGL + + + G Sbjct: 148 SSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEKQPG 207 Query: 186 IILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTDQFKTL 245 +L SDA YTA ++GPP + G+++D IGY V IR A + V FGHD +QF +L Sbjct: 208 FLLVSDACYTATNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDREQFASL 267 Query: 246 RKSTEGYYE 254 KST+G+YE Sbjct: 268 IKSTDGFYE 276 >ref|ZP_00187340.1| hypothetical protein Rxyl170101 [Rubrobacter xylanophilus DSM 9941] Length = 271 Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 145/260 (55%), Gaps = 19/260 (7%) Query: 3 NPATINNPNAQTQFVEFPIYTVLIDHPE-GKILFDTACNPNSMGAQGRWAQSTQLSSPWV 61 PAT++N + Q +V P YTVL++HP+ G +LFD C+P + RW ++ Q P+ Sbjct: 23 KPATVDNKHPQADWVTIPTYTVLVEHPDLGWVLFDGTCHPE---WESRWPEALQPIFPYR 79 Query: 62 ASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNAT-----IIVHEDEFNGA 116 A E YL +LEQL ++ +I VV SHLHLDH GCL+ F IIVH+ EF A Sbjct: 80 AEERQYLPMQLEQLNLKMSDIDIVVISHLHLDHCGCLDFFRGTKAGRRGIIVHDAEFAHA 139 Query: 117 LQTYARN--EKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGML 174 L+ + + GAYV D D + N + P +L+L + + ++ GH G++ Sbjct: 140 LKVTHKGPVDYAGAYVKGDFD--MPNLNYDLMLGP---HLELAPDLHLYHW-PGHTPGLI 193 Query: 175 GLQIEMPETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVW 234 G+ +G I SDAIY + V GI+YD + Y N++ +I+ LA + ++ + Sbjct: 194 GMVAHTEHSGTFIFTSDAIYLERNLKEWVL-SGIVYDTVAYFNSMYQIKQLARKHDATLG 252 Query: 235 FGHDTDQFKTLRKSTEGYYE 254 +GHD ++F+ L+K+ E YYE Sbjct: 253 YGHDMEKFRALKKAPE-YYE 271 >gb|AAP57766.1| acyl homoserine lactone degrading enzyme [Arthrobacter sp. IBN110] Length = 273 Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 20/256 (7%) Query: 5 ATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLS----SPW 60 A NN Q ++ E P + VLI+HPEG+IL+DT P + RW +S + Sbjct: 32 ADRNNKERQREWGEIPTHAVLIEHPEGRILWDTGV-PRDWSS--RWQESGMDNYFPVKTE 88 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNAT--IIVHEDEFNGALQ 118 +SE +L + L Q+ + P +I ++ SHLHLDHAG LF N I+ + E G + Sbjct: 89 SSSESGFLDSSLAQVGLEPADIDLLILSHLHLDHAGNARLFDNGKTKIVANRKELEGVQE 148 Query: 119 TYARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQI 178 + G ++ AD + I E + ++V G+ +++ GH WG + LQ+ Sbjct: 149 IMGSHL--GGHLKADFEG--------LKIDAIEGDTEIVPGVSVIDT-PGHTWGTMSLQV 197 Query: 179 EMPETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHD 238 ++P+ G I SDA+Y +SFGPP ++++ + + +VEK+R + RTN+++ FGH+ Sbjct: 198 DLPDDGTKIFTSDAVYLRDSFGPPAIGAAVVWNNLLWLESVEKLRRIQERTNAEMIFGHE 257 Query: 239 TDQFKTLRKSTEGYYE 254 ++Q +R + +G+Y+ Sbjct: 258 SEQTSQIRWAHQGHYQ 273 >ref|NP_660009.1| unknown [Rhizobium etli] gb|AAM55022.1| unknown [Rhizobium etli] Length = 253 Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 14/249 (5%) Query: 6 TINNPNA-QTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQG-RWAQSTQLSSPWVAS 63 +I P A + + +E P++ L+ HP+G LFD+ CNP + G RW +++ +P + Sbjct: 16 SIYVPGALKEEAIELPVHATLMRHPQGNALFDSGCNPEAAIDPGARWGGLSKVMTPIFSP 75 Query: 64 EECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTYARN 123 E +H +L+ L + PE+I V+ SHLH DH GC F ATI+ HE E A + A N Sbjct: 76 ERTVVH-QLKTLALDPEDIDVVICSHLHPDHCGCNAYFRRATILCHEAEAQAATASGAEN 134 Query: 124 EKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEMPET 183 + Y+ + W + Q ++T D DG +L GH GM ++E+ + Sbjct: 135 Q---GYLRGE---WDQPQ-GFQTFNAEHDVFG--DGRIVLLPMPGHTPGMTVARVELEKD 185 Query: 184 GGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTDQFK 243 G ILASDA S + P +++ A+ +++ L R S + FGHD Q++ Sbjct: 186 GSFILASDAAPLQASVDTGIAPRN-TWNIELAAEALARLKALRERGAS-IIFGHDDAQWQ 243 Query: 244 TLRKSTEGY 252 LRK E Y Sbjct: 244 ELRKGVEFY 252 >ref|NP_929495.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE14531.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 256 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 28/247 (11%) Query: 18 EFPIYTVLIDHPEGKILFD------TACNPNSMGAQGRWAQSTQLSSPWVASEECYLHNR 71 E PI L+ HP G L D TA +P +G W T+ P + +E + + Sbjct: 25 EIPIPFFLLTHPNGHTLIDGGNAVETATDP-----EGYWGTITKTYWPVMREDEGCI-AQ 78 Query: 72 LEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTYARNEK---EGA 128 +++L I P +I+YVV SHLHLDH G + F NAT IV E+ YA G Sbjct: 79 VKKLDIDPADIRYVVQSHLHLDHTGAIGRFPNATHIVQRREYE-----YAYTPDWFAAGG 133 Query: 129 YVWADIDAWIKNQLQWKTIKPGEDN--LDLV-DGIKILNFGSGHAWGMLGLQIEMPETGG 185 Y+ D D ++ L+W+ + GE N D+ DG F GH+ G L + +P +G Sbjct: 134 YIRKDFD---RSGLKWEFLD-GERNDMFDVYGDGTLKTVFTPGHSPGHQSLLVTLPNSGS 189 Query: 186 IILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTDQFKTL 245 ++L DA YT + + PG + I +V+K+R LA RTN+ V GHD D + T Sbjct: 190 LLLTIDAAYTLDHWEERAL-PGFLTSTIETVRSVQKLRHLAKRTNAIVVTGHDPDAWPTF 248 Query: 246 RKSTEGY 252 R++ E Y Sbjct: 249 RQAPEYY 255 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 417,949,003 Number of extensions: 17708928 Number of successful extensions: 37184 Number of sequences better than 1.0e-05: 82 Number of HSP's gapped: 37034 Number of HSP's successfully gapped: 82 Length of query: 254 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 131 Effective length of database: 423,280,401 Effective search space: 55449732531 Effective search space used: 55449732531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)