BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0033.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099717.1| hypothetical protein [Desulfitobacterium hafn... 154 1e-36 gb|AAL87780.1| unknown [Desulfitobacterium hafniense] 147 2e-34 ref|ZP_00099714.1| COG0664: cAMP-binding proteins - catabolite g... 147 2e-34 ref|ZP_00098105.1| COG0664: cAMP-binding proteins - catabolite g... 108 9e-23 ref|NP_782539.1| transcriptional regulatory protein [Clostridium... 105 1e-21 >ref|ZP_00099717.1| hypothetical protein [Desulfitobacterium hafniense] gb|AAL87782.1| unknown [Desulfitobacterium hafniense] Length = 227 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MNNL-DSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSA 59 MN+L L Q LF GI ++P+ML L+A + Y K+++++REG V VGI+L G Sbjct: 1 MNDLLPFLAQVSLFKGIETEELPKMLNRLNARKVSYKKNDVILREGQSVHSVGIMLSGKV 60 Query: 60 QSTKLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCT 119 + K KG +++ PG A A ++ P +V ++ +IL+I + I+S CT Sbjct: 61 KVVKEDFKGNTNVMTFIEPGAMFAEAYACTQTANLPFTVLSVMETKILWIDYRKIISTCT 120 Query: 120 KLCMAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPF 179 C +HE+L+ N+ ++A +++ L+ + + + T ++K+LTYL +++G+ F IPF Sbjct: 121 SACESHEKLIENMMKALASKSILLNQKIEHISKRTTQEKLLTYLFDQSKKSGSNEFEIPF 180 Query: 180 DREAMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLLQKAVE 223 R+ +A+YL VDRSA+S EL ++R+G+++F+ N FKL + + E Sbjct: 181 SRQELADYLCVDRSAMSNELCKLQREGVLNFHLNHFKLSKSSSE 224 >gb|AAL87780.1| unknown [Desulfitobacterium hafniense] Length = 259 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MNNL-DSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSA 59 MN+L L Q LF GI ++P+ML L+A + Y K E+++REG V VG++L G Sbjct: 27 MNDLLPFLTQVSLFKGIQMAELPEMLTNLNARKVSYKKQEVILREGQSVYSVGVMLSGKV 86 Query: 60 QSTKLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCT 119 + K+ +G I++ PG A A ++ P +V ++ EIL+I + I+S CT Sbjct: 87 KVVKVDFRGNANIMAFIEPGEMFAEAYACTQTANLPFTVLSVTESEILWINYRKIISTCT 146 Query: 120 KLCMAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPF 179 C +HE+L+ N+ ++A +++ L+ + + + T ++K+L YL ++ G F IP Sbjct: 147 SACRSHEKLIENMMRALASKSILLNQKIEHISKRTTQEKLLAYLFDQSKKLGVNEFDIPL 206 Query: 180 DREAMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLLQKAVE 223 R+ +A+YL VDRSA+S EL ++R+G+++F+ N FKL + + E Sbjct: 207 SRQELADYLCVDRSAMSNELCKLQREGVLNFHLNHFKLSKSSSE 250 >ref|ZP_00099714.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Desulfitobacterium hafniense] Length = 277 Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MNNL-DSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSA 59 MN+L L Q LF GI ++P+ML L+A + Y K E+++REG V VG++L G Sbjct: 45 MNDLLPFLTQVSLFKGIQMAELPEMLTNLNARKVSYKKQEVILREGQSVYSVGVMLSGKV 104 Query: 60 QSTKLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCT 119 + K+ +G I++ PG A A ++ P +V ++ EIL+I + I+S CT Sbjct: 105 KVVKVDFRGNANIMAFIEPGEMFAEAYACTQTANLPFTVLSVTESEILWINYRKIISTCT 164 Query: 120 KLCMAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPF 179 C +HE+L+ N+ ++A +++ L+ + + + T ++K+L YL ++ G F IP Sbjct: 165 SACRSHEKLIENMMRALASKSILLNQKIEHISKRTTQEKLLAYLFDQSKKLGVNEFDIPL 224 Query: 180 DREAMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLLQKAVE 223 R+ +A+YL VDRSA+S EL ++R+G+++F+ N FKL + + E Sbjct: 225 SRQELADYLCVDRSAMSNELCKLQREGVLNFHLNHFKLSKSSSE 268 >ref|ZP_00098105.1| COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Desulfitobacterium hafniense] Length = 240 Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 108/212 (50%) Query: 12 LFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQSTKLSVKGKQI 71 S S +++ ++ KCL + Y K E V G +G+ILQG G + Sbjct: 13 FLSHFSDDELQEIGKCLLTRVQRYKKGEKVFEAGQPAVSMGVILQGRVYIEDDDAFGNRS 72 Query: 72 IVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLCMAHEQLLGN 131 I++ + G A ++ S A EP EIL + +I + C K C ++L N Sbjct: 73 ILAELHQGDTMAGSCVCAQRPSYLTSFIAAEPSEILLLNCGTIYTNCNKSCSIRGKMLEN 132 Query: 132 LFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDREAMAEYLDVD 191 L IA A+ + CL +IR K+L + + ++E G +FTI F R+ +A++L ++ Sbjct: 133 LLKIIAAEAVTQSRKLKCLSQRSIRGKLLAFFSYCVQEKGENSFTIRFSRQELADFLCLN 192 Query: 192 RSALSRELAWMKRDGLIDFYRNEFKLLQKAVE 223 RSA+S+EL M+ DGL+ F RN F++L V+ Sbjct: 193 RSAMSKELGKMRDDGLLRFDRNYFEMLSCEVK 224 >ref|NP_782539.1| transcriptional regulatory protein [Clostridium tetani E88] gb|AAO36476.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 229 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 4/215 (1%) Query: 4 LDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQSTK 63 ++ L S +F I DI ++L ++ T K + ++E + E D +GII+ G+ + K Sbjct: 9 IEVLKNSIIFKNIEEKDIIKILNSINYTIKFFHREENIAIEEDPCQSLGIIISGNVEIQK 68 Query: 64 LSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLCM 123 + GK I + G + S R+ P ++ A++ I+FI + IL KLC Sbjct: 69 IFASGKVITIDRLKQGNIFGEVIIFSNMRKYPATITAVQEASIMFISKEEIL----KLCS 124 Query: 124 AHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDREA 183 + + L N ++ + L L+ + L +IR KV +YL + + G + R+ Sbjct: 125 LNSKFLNNFMGLLSNKILMLNKKVKNLSYNSIRQKVSSYLLQEYEKRGNLILKLNISRKE 184 Query: 184 MAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLL 218 MAE L V R +LSRE+ MK +GLIDF +N K+L Sbjct: 185 MAELLGVPRPSLSREMIKMKEEGLIDFNKNIIKIL 219 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 298,630,883 Number of extensions: 10734559 Number of successful extensions: 29014 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 29051 Number of HSP's successfully gapped: 27 Length of query: 223 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 102 Effective length of database: 428,710,599 Effective search space: 43728481098 Effective search space used: 43728481098 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)