BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0030.p
         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00121426.1| hypothetical protein [Bifidobacterium longum ...   102   2e-21
ref|NP_116819.1| MS131, hypothetical protein [Microscilla sp. PR...    69   4e-11
ref|ZP_00066336.1| hypothetical protein [Microbulbifer degradans...    66   3e-10
ref|NP_631229.1| putative secreted sugar hydrolase [Streptomyces...    65   4e-10
gb|EAE19369.1| unknown [environmental sequence]                        61   7e-09

>ref|ZP_00121426.1| hypothetical protein [Bifidobacterium longum DJO10A]
          Length = 584

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 3/116 (2%)

Query: 13  LVEYHVAIQGSD-QAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGG-TKE 70
           + +YHV+ Q +     G+ A PF TI +AAAIA  GD + VHAG YRE V+P  GG +  
Sbjct: 1   MTQYHVSAQAAKTNGAGSAADPFLTIGQAAAIARAGDEVVVHAGTYRESVDPRFGGESAT 60

Query: 71  QRIVYQSA-GDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTKLHGDW 125
            RIVY++A G+   VITG+E +  W+ EGDGVW+  +PN+ F   NPY   + GDW
Sbjct: 61  NRIVYRAAAGEPRPVITGSERIDTWQPEGDGVWKAVIPNAFFNGYNPYVETVFGDW 116


>ref|NP_116819.1| MS131, hypothetical protein [Microscilla sp. PRE1]
 gb|AAK62853.1| MS131, hypothetical protein [Microscilla sp. PRE1]
          Length = 175

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 11  GYLVEYHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKE 70
           G   +Y+VA  G+D+ PGTE  PF TIS+AA++ + GD   + AG+YRE V P   G   
Sbjct: 51  GSATDYYVAKDGNDENPGTEEAPFLTISKAASVLQAGDVCYIKAGIYRETVEPDVSGVSG 110

Query: 71  QRIVYQSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSL 110
             I + S     VV+ G   V  W+     ++R   P SL
Sbjct: 111 NPITFTSYPGDSVVVLGTTKVTRWEPYQGSIYRA--PASL 148


>ref|ZP_00066336.1| hypothetical protein [Microbulbifer degradans 2-40]
          Length = 1024

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 56/92 (60%)

Query: 15  EYHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKEQRIV 74
           + +VA  G D   G+ + P++T+++AA  A+ GD + +  G Y+E + PAN GT    IV
Sbjct: 27  DIYVAPTGDDAGAGSFSSPYQTLAKAAQTAQAGDVVYLREGTYQETLRPANSGTASHPIV 86

Query: 75  YQSAGDGEVVITGAEPVADWKDEGDGVWRTEV 106
           +QS  + +V+I+  E ++ W+ +   +++T V
Sbjct: 87  FQSYQNEKVIISAMEALSGWQQDTSNIYKTTV 118


>ref|NP_631229.1| putative secreted sugar hydrolase [Streptomyces coelicolor A3(2)]
 emb|CAC01659.1| putative secreted sugar hydrolase [Streptomyces coelicolor A3(2)]
          Length = 786

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query: 17  HVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKEQRIVYQ 76
           +V++ GSD   GT+  PF T+ + A +A+ GD   + AG YRE + P   GT   RI ++
Sbjct: 37  YVSVTGSDANRGTKQSPFSTVQQCADVAQAGDTCVIAAGTYRETLTPPRDGTASARITFR 96

Query: 77  SAGDGEVVITGAEPVADW 94
           +A    VV+ G+ PV  W
Sbjct: 97  AAPGARVVLDGSAPVDGW 114


>gb|EAE19369.1| unknown [environmental sequence]
          Length = 146

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 15  EYHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPAN-GGTKEQRI 73
           EY+VA  GSD+ PGT   PFR + RA+ +   GD   +  GVY E +N  +  G +   I
Sbjct: 18  EYYVATYGSDENPGTFELPFRNVQRASEVMIGGDICFIRQGVYHEVINLTDQDGVEGAEI 77

Query: 74  VYQSAGDGEVVITGAEPV-ADWKDEGDGVWRTEV 106
           V+ S  D  VV  G   + + W+     +WRT V
Sbjct: 78  VFTSFNDERVVFDGTITIDSLWQIYSGNIWRTSV 111


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 240,920,455
Number of extensions: 10234071
Number of successful extensions: 13831
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 13839
Number of HSP's successfully gapped: 12
Length of query: 142
Length of database: 757,237,578
Length adjustment: 103
Effective length of query: 39
Effective length of database: 477,582,381
Effective search space: 18625712859
Effective search space used: 18625712859
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)