BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0017.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183298.1| hypothetical protein Exigu129101 [Exiguobacte... 161 1e-38 ref|NP_655705.1| hypothetical protein predicted by GeneMark [Bac... 154 2e-36 ref|NP_831546.1| Fibronectin-binding protein [Bacillus cereus AT... 153 3e-36 ref|NP_978243.1| fibronectin-binding protein, putative [Bacillus... 153 4e-36 ref|NP_470072.1| putative fibronectin-binding protein [Listeria ... 142 8e-33 >ref|ZP_00183298.1| hypothetical protein Exigu129101 [Exiguobacterium sp. 255-15] Length = 191 Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 3/190 (1%) Query: 41 LRSVADQSVLKTVRYRTAVNIIEAFPSLTTEQERMLEQVSGLETAHEFQSYLYALEPYLE 100 L +V D V V Y + I + P LT EQE +L V ++T +F YL ++P+++ Sbjct: 5 LSAVHDPDVRDAVIYSASKKIFDLLPVLTAEQEALLMVVRTVQTEADFARYLEDIQPFVQ 64 Query: 101 PFPPITLKQIQKLFPKNKKLKMPDLQSIDFRYVTYLSWVDIATNKLFIVYTFEGQFIGIE 160 FP IT +Q+Q+LF K KKL+ P L SIDF TYLSW D K F VY +G++IGIE Sbjct: 65 SFPSITEQQLQQLFRKTKKLRHPPLHSIDFLKTTYLSWNDTGNKKKFFVYPLKGEWIGIE 124 Query: 161 GRITPTHKKGYCMFCNRHQELAFITVKTKPANALPDQYSSIGQYVCMDGHACNQSITNTT 220 G PT +KG C CN++ ++ ++ +T N DQY +IG Y+C+D CN+ +T+ Sbjct: 125 GTYLPTIQKGICTICNQYSDVTLVSART---NQSADQYRAIGNYICIDSDHCNEQVTDPI 181 Query: 221 SLEKFIDSVR 230 +LEK + ++ Sbjct: 182 ALEKLLSKMK 191 >ref|NP_655705.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844259.1| fibronectin-binding protein, putative [Bacillus anthracis str. Ames] gb|AAP25745.1| fibronectin-binding protein, putative [Bacillus anthracis str. Ames] Length = 213 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 126/213 (59%), Gaps = 3/213 (1%) Query: 20 PFIRNHQYNVIKKQTDFLQKTLRSVADQSVLKTVRYRTAVNIIEAFPSLTTEQERMLEQV 79 FIR+ QYN IK Q L + D+ V++ ++ II F +LT EQ+ +++ V Sbjct: 3 AFIRSDQYNFIKSQAYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELIDTV 62 Query: 80 SGLETAHEFQSYLYALEPYLEPFPPITLKQIQKLFPKNKKLKMPDLQSIDFRYVTYLSWV 139 ++ + +S+L + PY+ PF +T + ++KLFPK KKLK+PD++ +D + ++YLSWV Sbjct: 63 LTVQNREDAESFLTKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEEMDMKEISYLSWV 122 Query: 140 DIATNKLFIVYTFE-GQFIGIEGRITPTHKKGYCMFCNRHQELAFITVKTKPANALPDQY 198 D +++ FI+ + +F+G++G +KK C C+ H+E+ V+ K +P + Sbjct: 123 DKGSSRKFIIAKNDKNKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIK--GDIPGTF 180 Query: 199 SSIGQYVCMDGHACNQSITNTTSLEKFIDSVRK 231 G Y+C DG ACNQ++ + L+ FI+ ++K Sbjct: 181 VKKGNYICKDGVACNQNMKSLDKLQDFIERLKK 213 >ref|NP_831546.1| Fibronectin-binding protein [Bacillus cereus ATCC 14579] gb|AAP08747.1| Fibronectin-binding protein [Bacillus cereus ATCC 14579] Length = 213 Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 125/213 (58%), Gaps = 3/213 (1%) Query: 20 PFIRNHQYNVIKKQTDFLQKTLRSVADQSVLKTVRYRTAVNIIEAFPSLTTEQERMLEQV 79 FIR+ QYN IK Q L + D+ V++ ++ II F +LT EQ+ +++ V Sbjct: 3 AFIRSDQYNFIKSQAYILANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELIDTV 62 Query: 80 SGLETAHEFQSYLYALEPYLEPFPPITLKQIQKLFPKNKKLKMPDLQSIDFRYVTYLSWV 139 ++ + +S+L + PY+ PF +T + ++KLFPK KKLK+PD++ +D + ++YLSW+ Sbjct: 63 LTVQNREDAESFLMKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEEMDMKEISYLSWI 122 Query: 140 DIATNKLFIVYTFE-GQFIGIEGRITPTHKKGYCMFCNRHQELAFITVKTKPANALPDQY 198 D +++ FI+ + +F+G++G +KK C C+ H+E+ V+ K +P + Sbjct: 123 DKGSSRKFIIAKNDKNKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIK--GDVPGTF 180 Query: 199 SSIGQYVCMDGHACNQSITNTTSLEKFIDSVRK 231 G Y+C DG ACNQ++ + L FI+ ++K Sbjct: 181 VKKGNYICKDGVACNQNMKSLDKLHDFIERLKK 213 >ref|NP_978243.1| fibronectin-binding protein, putative [Bacillus cereus ATCC 10987] gb|AAS40851.1| fibronectin-binding protein, putative [Bacillus cereus ATCC 10987] Length = 213 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 125/213 (58%), Gaps = 3/213 (1%) Query: 20 PFIRNHQYNVIKKQTDFLQKTLRSVADQSVLKTVRYRTAVNIIEAFPSLTTEQERMLEQV 79 FIR+ QYN IK Q L + D+ V++ ++ II F +LT EQ+ +++ V Sbjct: 3 AFIRSDQYNFIKSQAYNLANGHATANDRGVIQALKSLAIEKIIHVFENLTDEQKELIDTV 62 Query: 80 SGLETAHEFQSYLYALEPYLEPFPPITLKQIQKLFPKNKKLKMPDLQSIDFRYVTYLSWV 139 ++ + +++L + PY+ PF +T + ++KLFPK KKLK+PD++ ID + ++YLSWV Sbjct: 63 LTVQNREDAEAFLMKINPYVIPFQEVTAQTLKKLFPKAKKLKLPDMEEIDMKEISYLSWV 122 Query: 140 DIATNKLFIVYTFE-GQFIGIEGRITPTHKKGYCMFCNRHQELAFITVKTKPANALPDQY 198 D +++ FI+ + +F+G++G +KK C C+ H+E+ V+ K +P + Sbjct: 123 DKGSSRKFIIAKNDKNKFVGLQGTFQSLNKKSICSLCHGHEEVGMFLVEIK--GDIPGTF 180 Query: 199 SSIGQYVCMDGHACNQSITNTTSLEKFIDSVRK 231 G Y+C DG ACNQ++ + L FI+ ++K Sbjct: 181 VKKGNYICKDGVACNQNMKSLDKLHDFIERLKK 213 >ref|NP_470072.1| putative fibronectin-binding protein [Listeria innocua] pir||AI1523 probable fibronectin-binding protein lin0729 [imported] - Listeria innocua (strain Clip11262) emb|CAC95961.1| putative fibronectin-binding protein [Listeria innocua] Length = 215 Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 3/212 (1%) Query: 21 FIRNHQYNVIKKQTDFLQKTLRSVADQSVLKTVRYRTAVNIIEAFP-SLTTEQERMLEQV 79 FI +QYN IKKQ + + + RS D+S LK ++ T I E FP S+ E + + ++ Sbjct: 4 FIEPYQYNFIKKQIENVSRAYRSANDRSTLKALKSLTEEKINELFPESVLEEHKELFSEL 63 Query: 80 SGLETAHEFQSYLYALEPYLEPFPPITLKQIQKLFPKNKKLKMPDLQSIDFRYVTYLSWV 139 + + E + +L L+ Y+ PF P + +++KLF K KKLK+P +D R T+ W Sbjct: 64 HLITSTKEAEPFLEGLKAYVIPFAPPSDVKLKKLFAKTKKLKIPAWSKLDLRDYTFYGWN 123 Query: 140 DIATNKLFIVYTFEGQFIGIEGRITPTHKKGYCMFCNRHQELAFITVKTKPANALPDQYS 199 DIA + +IV +G +G+ G I+P +KG C C H +++ KTK ++ Y+ Sbjct: 124 DIAQQRKYIVTYEDGNLVGVNGTISPEIQKGVCSICQTHSKVSLFMAKTKSSS--DGVYT 181 Query: 200 SIGQYVCMDGHACNQSITNTTSLEKFIDSVRK 231 + G Y+C D CN+ I +L++FI+ V+K Sbjct: 182 TNGNYICYDSDVCNEQIKAHETLDEFIEVVKK 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 321,661,889 Number of extensions: 12378408 Number of successful extensions: 28789 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 28758 Number of HSP's successfully gapped: 15 Length of query: 231 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 109 Effective length of database: 425,995,500 Effective search space: 46433509500 Effective search space used: 46433509500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 124 (52.4 bits)