BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0015.p (498 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347167.1| ABC transporter, ATPase component (two ATPase d... 682 0.0 gb|AAL05553.1| putative ABC transporter [Enterococcus faecalis] 652 0.0 ref|NP_844899.1| ABC transporter, ATP-binding protein [Bacillus ... 635 0.0 ref|NP_899166.1| ABC transporter [Staphylococcus sciuri] >gi|333... 608 e-172 ref|NP_970661.1| ABC transporter, ATP-binding protein [Treponema... 507 e-142 >ref|NP_347167.1| ABC transporter, ATPase component (two ATPase domains) [Clostridium acetobutylicum] pir||H96964 ABC transporter, ATPase component (two ATPase domains) CAC0528 [imported] - Clostridium acetobutylicum gb|AAK78507.1| ABC transporter, ATPase component (two ATPase domains) [Clostridium acetobutylicum] Length = 492 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/498 (67%), Positives = 400/498 (80%), Gaps = 6/498 (1%) Query: 1 MSLINVTGLTFAYEGTYDNIFENVNXXXXIDTDWKLGFTGRNGRGKTTFLQLLLGKHEYS 60 MSLINVT LTFAYEG+YDNIFENV+ IDTDWKLGFTGRNGRGKTTFL LLLGK+EY+ Sbjct: 1 MSLINVTNLTFAYEGSYDNIFENVSFQ--IDTDWKLGFTGRNGRGKTTFLNLLLGKYEYN 58 Query: 61 GTISAKVNFXXXXXYFPYPVPNKEYHTLDVISDMFPDYVHWQFMRELSLLQVDEDVLYRP 120 G+IS VNF YFPY V K +DVI ++ P+ + W+ ++ELSLL +D + LYR Sbjct: 59 GSISTDVNFE----YFPYEVQEKGKFVIDVIKEISPNSMDWEIVKELSLLDIDYEALYRQ 114 Query: 121 FASLSNGEQTKVLLAALFIKENSFLLIDEPTNHLDMHARTLVSEYLNTKSGYILVSHDRS 180 F +LS GEQTK LLAA+F+KENSFLLIDEPTNHLD R +S YL K G+IL+SHDRS Sbjct: 115 FYTLSKGEQTKSLLAAMFLKENSFLLIDEPTNHLDAEGRKKLSNYLKKKKGFILISHDRS 174 Query: 181 FLDHCVDHILSINKTNIEIQKGNFSSWWENKRRQDNFELAQNEKLRKDIKRLSDSSKRTG 240 FLD+CVDHILSIN+TNIEIQKGNFSSWW NK +D FELA+NEKL+KDI RLS S+KRT Sbjct: 175 FLDNCVDHILSINRTNIEIQKGNFSSWWRNKELKDGFELAENEKLKKDINRLSSSAKRTS 234 Query: 241 NWSHEVEKSKNGTRNSGSKIDKGYVGHKAAKMMKRSKSIEQRQQSAITEKSKLLKNIESS 300 WS VE SK GT NSGSK+DKGYVGHK+ KMMKR+K+IE RQQ+ I EKS+LLKNIE++ Sbjct: 235 TWSDSVESSKYGTTNSGSKLDKGYVGHKSEKMMKRAKNIEARQQNMIKEKSRLLKNIENN 294 Query: 301 DTLEITQLAYHKNILAELEQVSIFYGEKQVCANVNFTIEQGERIALSGKNGSGKSSILKL 360 + L+I L +H L E+ V+I Y ++ VC V F IE+GERIA+ GKNGSGKSSILKL Sbjct: 295 ENLKIVPLTFHDKKLVEVIDVAIKYDDRIVCEGVRFNIEKGERIAIQGKNGSGKSSILKL 354 Query: 361 ICGEVIPYTGSFMKDSQLKISYVSQDTSHLQGSLADYIRDNGIDETLFKSILRKLDFSRN 420 I GE IP++G K+++L ISYVSQDTS L G+L++Y IDETLFKS+LRKLDFSR Sbjct: 355 IYGEDIPHSGIVRKNNKLIISYVSQDTSDLYGNLSEYADKYCIDETLFKSMLRKLDFSRE 414 Query: 421 QFEKDLSTYSGGQKKKVLIAKSLSEQVHLHIWDEPLNFIDVISRMQIEELLLEYTPTILF 480 QFEKD+ +SGGQKKKVL+AKSL E+ HL+IWDEPLNFIDVISRMQ+E+LL+EY PTILF Sbjct: 415 QFEKDIKDFSGGQKKKVLLAKSLCERAHLYIWDEPLNFIDVISRMQVEKLLIEYEPTILF 474 Query: 481 VEHDREFCSNVATKTIEL 498 VEHD FC NVATKTI+L Sbjct: 475 VEHDISFCENVATKTIKL 492 >gb|AAL05553.1| putative ABC transporter [Enterococcus faecalis] Length = 494 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/498 (65%), Positives = 401/498 (80%), Gaps = 6/498 (1%) Query: 1 MSLINVTGLTFAYEGTYDNIFENVNXXXXIDTDWKLGFTGRNGRGKTTFLQLLLGKHEYS 60 MSLINV+ LTF+YEG+YDNIFENV+ IDTDWKLGF GRNGRGKTTFL LLLGK+ YS Sbjct: 1 MSLINVSNLTFSYEGSYDNIFENVSFQ--IDTDWKLGFIGRNGRGKTTFLNLLLGKYAYS 58 Query: 61 GTISAKVNFXXXXXYFPYPVPNKEYHTLDVISDMFPDYVHWQFMRELSLLQVDEDVLYRP 120 G IS+ V F YFPY V +K +T++V+ + + + W+ RE+SLL V ED LYRP Sbjct: 59 GNISSTVKFE----YFPYDVEDKSLYTIEVMKSICTECMDWEIFREISLLDVQEDALYRP 114 Query: 121 FASLSNGEQTKVLLAALFIKENSFLLIDEPTNHLDMHARTLVSEYLNTKSGYILVSHDRS 180 F +LSNGEQTKVLLAALF+ + FLLIDEPTNHLD+ AR +V YL K G+ILVSHDRS Sbjct: 115 FNTLSNGEQTKVLLAALFLTASCFLLIDEPTNHLDIDARNVVQNYLKRKKGFILVSHDRS 174 Query: 181 FLDHCVDHILSINKTNIEIQKGNFSSWWENKRRQDNFELAQNEKLRKDIKRLSDSSKRTG 240 LD CVDHILSINKTNIEIQKGNF+SWWENK QDNFELA+N+KL K+I RLS ++KR+ Sbjct: 175 LLDQCVDHILSINKTNIEIQKGNFTSWWENKTLQDNFELAENKKLLKEIGRLSYAAKRSS 234 Query: 241 NWSHEVEKSKNGTRNSGSKIDKGYVGHKAAKMMKRSKSIEQRQQSAITEKSKLLKNIESS 300 NWS++VEKSK GT NSGSK+DKGYVGHKAAK MKR+K+IE R Q A+ +KS+LL NIE Sbjct: 235 NWSNKVEKSKYGTTNSGSKLDKGYVGHKAAKAMKRAKNIESRHQEAVLQKSELLHNIEQY 294 Query: 301 DTLEITQLAYHKNILAELEQVSIFYGEKQVCANVNFTIEQGERIALSGKNGSGKSSILKL 360 D L+I+ L +HK L E +S+ YG+K+VC+N+NF + G+R+A+ GKNGSGKSSILKL Sbjct: 295 DDLKISPLEFHKECLIEANDLSLSYGDKEVCSNLNFRVNIGDRVAIIGKNGSGKSSILKL 354 Query: 361 ICGEVIPYTGSFMKDSQLKISYVSQDTSHLQGSLADYIRDNGIDETLFKSILRKLDFSRN 420 I G+ I +TG+FM S LKISY+SQDTS+L+G+L+++ +N IDETLFK+ILRKLDF+R Sbjct: 355 INGDDIKFTGNFMLASGLKISYISQDTSYLKGNLSEFAYNNKIDETLFKTILRKLDFNRE 414 Query: 421 QFEKDLSTYSGGQKKKVLIAKSLSEQVHLHIWDEPLNFIDVISRMQIEELLLEYTPTILF 480 QF+K++ +S GQKKKVLIAKSL E HL+IWDEPLN+ID+ SR+QIE+++LEY PT+LF Sbjct: 415 QFDKNMVDFSAGQKKKVLIAKSLCESAHLYIWDEPLNYIDIFSRIQIEKMILEYCPTLLF 474 Query: 481 VEHDREFCSNVATKTIEL 498 VEHD FC+N+ TK I L Sbjct: 475 VEHDDAFCNNICTKNINL 492 >ref|NP_844899.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26385.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 492 Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/498 (62%), Positives = 382/498 (76%), Gaps = 6/498 (1%) Query: 1 MSLINVTGLTFAYEGTYDNIFENVNXXXXIDTDWKLGFTGRNGRGKTTFLQLLLGKHEYS 60 MS+I V LTF+Y G++DNIFE+VN IDTDWKLGF GRNGRGKTTFL LLLG +EYS Sbjct: 1 MSMIKVQDLTFSYPGSFDNIFEDVNFQ--IDTDWKLGFIGRNGRGKTTFLNLLLGNYEYS 58 Query: 61 GTISAKVNFXXXXXYFPYPVPNKEYHTLDVISDMFPDYVHWQFMRELSLLQVDEDVLYRP 120 G I A V F YFPYPV +K T +++ ++ P W+F+RE+S L VD +V+YRP Sbjct: 59 GKILASVEFN----YFPYPVADKNKFTHEILEEICPQAEGWEFLREISYLNVDAEVMYRP 114 Query: 121 FASLSNGEQTKVLLAALFIKENSFLLIDEPTNHLDMHARTLVSEYLNTKSGYILVSHDRS 180 F +LSNGEQTKVLLAALF+ E FLLIDEPTNHLD AR +VS+YL K G+IL+SHDR Sbjct: 115 FKTLSNGEQTKVLLAALFLNEGQFLLIDEPTNHLDTDARKIVSDYLRKKKGFILISHDRI 174 Query: 181 FLDHCVDHILSINKTNIEIQKGNFSSWWENKRRQDNFELAQNEKLRKDIKRLSDSSKRTG 240 FLD CVDHILSIN+ NIE+Q G++SSW N RQ E A N++L+KDI RL SSKR+ Sbjct: 175 FLDGCVDHILSINRANIEVQSGDYSSWKLNFDRQQEHEQATNDRLQKDIGRLKQSSKRSA 234 Query: 241 NWSHEVEKSKNGTRNSGSKIDKGYVGHKAAKMMKRSKSIEQRQQSAITEKSKLLKNIESS 300 +WSH+V SKNGTRNSGSK+DKG+VGHKAAKMMKR+K++E RQQ I EKSKLLKN+E + Sbjct: 235 SWSHDVGASKNGTRNSGSKLDKGFVGHKAAKMMKRAKNLESRQQKVIEEKSKLLKNVEKT 294 Query: 301 DTLEITQLAYHKNILAELEQVSIFYGEKQVCANVNFTIEQGERIALSGKNGSGKSSILKL 360 ++L++ L + N L L VS+ Y ++ V ++F +EQ +RI L GKNGSGKSSILKL Sbjct: 295 ESLKLEALKFKSNELVILADVSVKYDDQVVNEPISFIVEQDDRIVLDGKNGSGKSSILKL 354 Query: 361 ICGEVIPYTGSFMKDSQLKISYVSQDTSHLQGSLADYIRDNGIDETLFKSILRKLDFSRN 420 I G+ I YTG + L ISYV QDTSHL+GSL+DYI + IDETLFKSILRK+DF R Sbjct: 355 ILGQSIQYTGLVTLGTGLTISYVQQDTSHLKGSLSDYIEEQKIDETLFKSILRKMDFDRI 414 Query: 421 QFEKDLSTYSGGQKKKVLIAKSLSEQVHLHIWDEPLNFIDVISRMQIEELLLEYTPTILF 480 QFEKD+S YSGGQKKK+LIAKSL E+ HL+IWDEPLNFID+ SRMQIEEL+ ++ PT++ Sbjct: 415 QFEKDISHYSGGQKKKLLIAKSLCEKAHLYIWDEPLNFIDIYSRMQIEELIQQFNPTMVI 474 Query: 481 VEHDREFCSNVATKTIEL 498 VEHD+ F VATKTI + Sbjct: 475 VEHDKAFQQTVATKTISM 492 >ref|NP_899166.1| ABC transporter [Staphylococcus sciuri] emb|CAE18141.1| ABC transporter [Staphylococcus sciuri] Length = 492 Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 300/498 (60%), Positives = 373/498 (74%), Gaps = 6/498 (1%) Query: 1 MSLINVTGLTFAYEGTYDNIFENVNXXXXIDTDWKLGFTGRNGRGKTTFLQLLLGKHEYS 60 MS+I+V LTF+Y ++DNIFE+V+ IDTDWKLGF GRNGRGKTT LLL K EY Sbjct: 1 MSMIHVQNLTFSYPSSFDNIFEDVSFQ--IDTDWKLGFIGRNGRGKTTLFNLLLDKFEYR 58 Query: 61 GTISAKVNFXXXXXYFPYPVPNKEYHTLDVISDMFPDYVHWQFMRELSLLQVDEDVLYRP 120 G I + V+F YFPYPV +K +T +++ ++ P W+F+RE++ L VD + +YRP Sbjct: 59 GKIISSVDFN----YFPYPVEDKSKYTHEILEEICPQAEDWEFLREIAYLNVDAEAMYRP 114 Query: 121 FASLSNGEQTKVLLAALFIKENSFLLIDEPTNHLDMHARTLVSEYLNTKSGYILVSHDRS 180 F +LSNGEQTKVLL ALF+ E FLLIDEPTNHLD AR VS YL K G IL+SHDR+ Sbjct: 115 FETLSNGEQTKVLLVALFLNEGQFLLIDEPTNHLDTEARKTVSNYLRKKKGNILISHDRN 174 Query: 181 FLDHCVDHILSINKTNIEIQKGNFSSWWENKRRQDNFELAQNEKLRKDIKRLSDSSKRTG 240 FLD VDHILSIN+ +IE+Q GN+SSW N RQ E A NE+L+KDI RL S+KR+ Sbjct: 175 FLDGSVDHILSINRADIEVQSGNYSSWKLNFDRQQGHEQATNERLQKDIGRLEQSTKRSA 234 Query: 241 NWSHEVEKSKNGTRNSGSKIDKGYVGHKAAKMMKRSKSIEQRQQSAITEKSKLLKNIESS 300 WS+ VE SKNGT NSGSK+DKG+VGHKAAKMMKRSK++E RQQ +I EKSKLLKNIE + Sbjct: 235 GWSNRVEASKNGTTNSGSKLDKGFVGHKAAKMMKRSKNLEARQQKSIEEKSKLLKNIEKT 294 Query: 301 DTLEITQLAYHKNILAELEQVSIFYGEKQVCANVNFTIEQGERIALSGKNGSGKSSILKL 360 ++L+ + Y L +L VS+ Y + V ++F +EQG+RI L GKNGSGKSSILKL Sbjct: 295 ESLQFEPVEYKSKELIQLTDVSVIYDGQVVNKPISFNVEQGDRIVLDGKNGSGKSSILKL 354 Query: 361 ICGEVIPYTGSFMKDSQLKISYVSQDTSHLQGSLADYIRDNGIDETLFKSILRKLDFSRN 420 I G+ I YTG+ S L SYV QDTSHL+G LAD+I +N IDE+LFK+ILRKLDF R Sbjct: 355 ILGDPIQYTGTLNTGSNLITSYVQQDTSHLKGMLADFIEENEIDESLFKAILRKLDFDRV 414 Query: 421 QFEKDLSTYSGGQKKKVLIAKSLSEQVHLHIWDEPLNFIDVISRMQIEELLLEYTPTILF 480 QFEKD+S YSGGQKKK+LIAKSL E+ HL+IWDEPLNFID+ SRMQIEEL+ + PT++F Sbjct: 415 QFEKDISHYSGGQKKKLLIAKSLCEKAHLYIWDEPLNFIDIYSRMQIEELIQTFNPTMVF 474 Query: 481 VEHDREFCSNVATKTIEL 498 VEHD+ F ++TK I++ Sbjct: 475 VEHDQTFQETISTKIIKI 492 >ref|NP_970661.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] gb|AAS10542.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] Length = 490 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/496 (50%), Positives = 350/496 (70%), Gaps = 11/496 (2%) Query: 3 LINVTGLTFAYEGTYDNIFENVNXXXXIDTDWKLGFTGRNGRGKTTFLQLLLGKHEYSGT 62 LI+V +TFAY G+ + +FEN+N +DTDWKLG GRNG GKTTFL LL K EYSG Sbjct: 2 LIDVKNVTFAYYGSAEPVFENLNLQ--LDTDWKLGLIGRNGYGKTTFLNLLQNKLEYSGK 59 Query: 63 ISAKVNFXXXXXYFPYPVPNKEYHTLDVISDMFPDYVHWQFMRELSLLQVDEDVLYRPFA 122 I + V+F YFPY + K T +++ P WQ ELSLL+ ++ RPF Sbjct: 60 IISPVSFE----YFPYVLEEKN-TTREIVLSRLPHIEGWQLDCELSLLKASSEIADRPFK 114 Query: 123 SLSNGEQTKVLLAALFIKENSFLLIDEPTNHLDMHARTLVSEYLNTKSGYILVSHDRSFL 182 +LS+GEQ KVLLAA+F+ ENSF+LIDEPTNHLD++ R V++YL K G+ILVSHDR FL Sbjct: 115 TLSSGEQIKVLLAAMFLHENSFILIDEPTNHLDVYGRAAVADYLKNKKGFILVSHDRDFL 174 Query: 183 DHCVDHILSINKTNIEIQKGNFSSWWENKRRQDNFELAQNEKLRKDIKRLSDSSKRTGNW 242 + VDH+L+I K NI +Q GN+ +W ENK +QDNFE+ +N +LRK+IKRL ++++ W Sbjct: 175 NRTVDHVLTIEKNNIYVQNGNYDTWEENKIKQDNFEIEKNIQLRKEIKRLKAAARQKAGW 234 Query: 243 SHEVEKSKNGTRNSGSKIDKGYVGHKAAKMMKRSKSIEQRQQSAITEKSKLLKNIESSDT 302 S EKSK+G D+GYV HKA+KMMKR+KSIE+ A+ EK KLLKNIE+ + Sbjct: 235 SDLKEKSKHGQW----IYDRGYVSHKASKMMKRAKSIERNADKAVAEKEKLLKNIETIED 290 Query: 303 LEITQLAYHKNILAELEQVSIFYGEKQVCANVNFTIEQGERIALSGKNGSGKSSILKLIC 362 + + L +H L E +S+ YG+K + + V+F+IE G ++L+GKNG+GKSSILKL+ Sbjct: 291 IPMRPLTHHAKHLIEASALSVSYGKKNIFSPVDFSIEAGGVLSLNGKNGAGKSSILKLLM 350 Query: 363 GEVIPYTGSFMKDSQLKISYVSQDTSHLQGSLADYIRDNGIDETLFKSILRKLDFSRNQF 422 GE I ++G+ K LKISY+ Q+ L+G L D+I ++ ID+T+F + LRKL+F ++ F Sbjct: 351 GEKIEFSGTLKKAQDLKISYIPQNFDFLKGQLFDFIEESNIDKTVFLTTLRKLNFPQDNF 410 Query: 423 EKDLSTYSGGQKKKVLIAKSLSEQVHLHIWDEPLNFIDVISRMQIEELLLEYTPTILFVE 482 +K++ TYS GQKKKVL+ +S+ E H +IWDEPLN+ID+ISR+QIE ++L+Y PT++ VE Sbjct: 411 DKNMETYSSGQKKKVLLTRSICESAHFYIWDEPLNYIDIISRLQIERMILKYGPTVILVE 470 Query: 483 HDREFCSNVATKTIEL 498 HD++F V+T +EL Sbjct: 471 HDKKFNEKVSTDFVEL 486 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 715,208,282 Number of extensions: 29913944 Number of successful extensions: 197327 Number of sequences better than 1.0e-05: 4727 Number of HSP's gapped: 195747 Number of HSP's successfully gapped: 6154 Length of query: 498 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 368 Effective length of database: 404,274,708 Effective search space: 148773092544 Effective search space used: 148773092544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)