BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0007.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_831391.1| Zn-dependent hydrolase [Bacillus cereus ATCC 14...    74   8e-13
ref|NP_655515.1| UPF0036, Uncharacterized protein family UPF0036...    74   9e-13
ref|NP_844087.1| metallo-beta-lactamase family protein [Bacillus...    74   9e-13
ref|NP_978051.1| metallo-beta-lactamase family protein [Bacillus...    72   3e-12
gb|AAF91325.1| unknown [Bacillus cereus]                               71   8e-12

>ref|NP_831391.1| Zn-dependent hydrolase [Bacillus cereus ATCC 14579]
 gb|AAP08592.1| Zn-dependent hydrolase [Bacillus cereus ATCC 14579]
          Length = 557

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKALKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>ref|NP_655515.1| UPF0036, Uncharacterized protein family UPF0036 [Bacillus
          anthracis A2012]
          Length = 549

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>ref|NP_844087.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
          Ames]
 gb|AAP25573.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
          Ames]
          Length = 549

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>ref|NP_978051.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC
          10987]
 gb|AAS40659.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC
          10987]
          Length = 557

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     + I ALGGV EIGKNMY++Q+ +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKSLKNNVSIVALGGVNEIGKNMYVIQFENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>gb|AAF91325.1| unknown [Bacillus cereus]
          Length = 47

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 36/47 (76%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
          M      L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL
Sbjct: 1  MNSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLL 47


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 97,927,868
Number of extensions: 3031473
Number of successful extensions: 6860
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 6861
Number of HSP's successfully gapped: 28
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)