BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0005.p
         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA90650.1| OrfW [Paenibacillus polymyxa]                         137   1e-31

>dbj|BAA90650.1| OrfW [Paenibacillus polymyxa]
          Length = 216

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 90/123 (73%), Gaps = 1/123 (0%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPDQVPLWG-KIELKSLKFTDG 59
           VYYTD Q+  L   K +I+Y   +EK+ +A+++LQ S +   VPLW  KI +  +K  +G
Sbjct: 94  VYYTDTQENGLKEQKKEITYPSELEKFQKAFEALQKSGDSALVPLWSEKITVHKIKLDNG 153

Query: 60  QIIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHP 119
            +  DI  PDEA+LGAGGE  AI AL QT+FQF+EVK++++LVDG+ +ESLMGHVDLEHP
Sbjct: 154 ALTFDISLPDEARLGAGGEELAIDALKQTMFQFKEVKTLDLLVDGQSLESLMGHVDLEHP 213

Query: 120 LTR 122
           ++R
Sbjct: 214 MSR 216


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.311    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 173,020,138
Number of extensions: 5822123
Number of successful extensions: 13337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13336
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 757,237,578
Length adjustment: 90
Effective length of query: 37
Effective length of database: 512,878,668
Effective search space: 18976510716
Effective search space used: 18976510716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)