BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0019.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833053.1| Quinolone resistence NorA protein [Bacillus cer... 202 1e-50 ref|NP_979609.1| major facilitator family transporter [Bacillus ... 201 2e-50 ref|NP_657205.1| sugar_tr, Sugar (and other) transporter [Bacill... 199 5e-50 ref|NP_266310.1| transporter [Lactococcus lactis subsp. lactis] ... 194 3e-48 ref|NP_470554.1| similar to antibiotic resistance protein [Liste... 182 9e-45 >ref|NP_833053.1| Quinolone resistence NorA protein [Bacillus cereus ATCC 14579] gb|AAP10254.1| Quinolone resistence NorA protein [Bacillus cereus ATCC 14579] Length = 399 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/292 (36%), Positives = 173/292 (59%), Gaps = 4/292 (1%) Query: 40 HGVIFGVATTAIPTVIMGMIPRERRGEGVGYFTLSGTMASAIGPFLGLVIREQANFTTMF 99 HG+ FG+ATTA T++ + P RRGE + YF + ++ IGPFLGL I +FT +F Sbjct: 108 HGIGFGMATTATGTIVTDVAPAHRRGEALAYFGVFMSLPMVIGPFLGLTIISHFSFTVLF 167 Query: 100 VVCAVFYVISIIVTAFADIP-EVVMTKEQLEVVKGFRLQDFFEKTAMPVSIVMLFVGMAY 158 +VC+VF +++ ++ DIP E ++K++ E +K +D E +++P+++ + +Y Sbjct: 168 IVCSVFSLLAFLLGLLVDIPHEAPVSKQKREKMK---WKDLIEPSSIPIALTGFVLAFSY 224 Query: 159 ASILAFINSYALSLSLMDAAAFFFVIYSAFIIISRLFTGRLLDNRGDNIVMYPAXXXXXX 218 + IL+FI YA L L + A++FF++Y+ ++ISR FTG++ D G+N+++YPA Sbjct: 225 SGILSFIPIYAKELGLSEIASYFFILYALVVVISRPFTGKIFDRFGENVLVYPAIIIFTI 284 Query: 219 XXXXISKAGDSFTXXXXXXXXXXXXXTIMSCAQVIAANNSPQHRMGIATSTFFFCADLGV 278 +S+A SF T++ Q IA + +P HR G AT+T+F D G+ Sbjct: 285 GMFILSQAQTSFWFLGAGMLIGLGYGTLIPSFQTIAISAAPNHRRGSATATYFSFFDSGI 344 Query: 279 GAGSFFAGEIVSMTGFRDMYMVMAIIVALSILLYYILHGRKTASDKHSAPGR 330 G GSF G + + + + +MY + AIIVA ++LLYY LHGRK K G+ Sbjct: 345 GFGSFILGIVAAKSSYHNMYFIAAIIVAFTLLLYYGLHGRKQKFKKQPTDGK 396 >ref|NP_979609.1| major facilitator family transporter [Bacillus cereus ATCC 10987] gb|AAS42217.1| major facilitator family transporter [Bacillus cereus ATCC 10987] Length = 399 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 173/292 (59%), Gaps = 4/292 (1%) Query: 40 HGVIFGVATTAIPTVIMGMIPRERRGEGVGYFTLSGTMASAIGPFLGLVIREQANFTTMF 99 HG+ FG+ATTA T++ + P RRGE + YF + ++ IGPFLGL I +FT +F Sbjct: 108 HGIGFGMATTATGTIVTDVAPAHRRGEALAYFGVFMSLPMVIGPFLGLTIISHFSFTVLF 167 Query: 100 VVCAVFYVISIIVTAFADIP-EVVMTKEQLEVVKGFRLQDFFEKTAMPVSIVMLFVGMAY 158 +VC++F +++ ++ +IP E ++K++ E +K +D E +++P+++ + +Y Sbjct: 168 IVCSIFSLLAFLLGLLVNIPHEAPVSKQKREKMK---WKDLLEPSSIPIALTGFVLAFSY 224 Query: 159 ASILAFINSYALSLSLMDAAAFFFVIYSAFIIISRLFTGRLLDNRGDNIVMYPAXXXXXX 218 + IL+FI YA L L D A++FF++Y+ ++ISR FTG++ D G+N+++YPA Sbjct: 225 SGILSFIPIYAKELGLADIASYFFILYALVVVISRPFTGKIFDRFGENVLVYPAIIIFTI 284 Query: 219 XXXXISKAGDSFTXXXXXXXXXXXXXTIMSCAQVIAANNSPQHRMGIATSTFFFCADLGV 278 +S+A SF T++ Q IA + +P HR G AT+T+F D G+ Sbjct: 285 GMFILSQAQTSFWFLGAGMLIGLGYGTLIPSFQTIAISAAPNHRRGSATATYFSFFDSGI 344 Query: 279 GAGSFFAGEIVSMTGFRDMYMVMAIIVALSILLYYILHGRKTASDKHSAPGR 330 G GSF G + + + + +MY + AIIVA ++LLYY LHGRK K G+ Sbjct: 345 GFGSFILGIVAAKSSYHNMYFIAAIIVAFTLLLYYGLHGRKQKFKKQHTDGK 396 >ref|NP_657205.1| sugar_tr, Sugar (and other) transporter [Bacillus anthracis A2012] ref|NP_845631.1| major facilitator family transporter [Bacillus anthracis str. Ames] gb|AAP27117.1| major facilitator family transporter [Bacillus anthracis str. Ames] Length = 399 Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 172/292 (58%), Gaps = 4/292 (1%) Query: 40 HGVIFGVATTAIPTVIMGMIPRERRGEGVGYFTLSGTMASAIGPFLGLVIREQANFTTMF 99 HG+ FG+ATTA T++ + P RRGE + YF + ++ IGPFLGL I +FT +F Sbjct: 108 HGIGFGMATTATGTIVTDVAPAHRRGEALAYFGVFMSLPMVIGPFLGLTIISHFSFTVLF 167 Query: 100 VVCAVFYVISIIVTAFADIP-EVVMTKEQLEVVKGFRLQDFFEKTAMPVSIVMLFVGMAY 158 +VC+VF +++ ++ +IP E ++K++ E +K +D E +++P+++ + +Y Sbjct: 168 IVCSVFSLLAFLLGLLVNIPHEAPVSKQKQEKMK---WKDLLEPSSIPIALTGFVLAFSY 224 Query: 159 ASILAFINSYALSLSLMDAAAFFFVIYSAFIIISRLFTGRLLDNRGDNIVMYPAXXXXXX 218 + IL+FI YA L L D A++FF++Y+ ++ISR FTG++ D G+N+++YPA Sbjct: 225 SGILSFIPIYAKELGLADIASYFFILYALVVVISRPFTGKIFDRFGENVLVYPAIIIFTI 284 Query: 219 XXXXISKAGDSFTXXXXXXXXXXXXXTIMSCAQVIAANNSPQHRMGIATSTFFFCADLGV 278 +S+A F T++ Q IA + +P HR G AT+T+F D G+ Sbjct: 285 GMFILSQAQTPFWFLGAGMLIGLGYGTLIPSFQTIAISAAPNHRRGSATATYFSFFDSGI 344 Query: 279 GAGSFFAGEIVSMTGFRDMYMVMAIIVALSILLYYILHGRKTASDKHSAPGR 330 G GSF G + + + + +MY + AIIVA ++LLYY LHGRK K G+ Sbjct: 345 GFGSFILGIVAAKSSYHNMYFIAAIIVAFTLLLYYGLHGRKQKFKKQRTDGQ 396 >ref|NP_266310.1| transporter [Lactococcus lactis subsp. lactis] pir||B86644 transporter ybfD [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK04252.1| transporter [Lactococcus lactis subsp. lactis] Length = 393 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 164/287 (57%), Gaps = 2/287 (0%) Query: 40 HGVIFGVATTAIPTVIMGMIPRERRGEGVGYFTLSGTMASAIGPFLGLVIREQANFTTMF 99 HG+ FG+A TA T+ ++P RRGEG+GY+ LS T++SA+GPFL + + + F ++ Sbjct: 107 HGLGFGIAATASGTLAGAIVPSSRRGEGIGYYALSVTLSSAVGPFLSMFLYRTSGFYSLI 166 Query: 100 VVCAVFYVISIIVTAFADIPEVVMTKEQLE--VVKGFRLQDFFEKTAMPVSIVMLFVGMA 157 + A+ I+++ F + + + ++ V K F ++FEK A+P+S++ +G++ Sbjct: 167 WLSALLLFIALVGIFFIHVEKTTDSSNSVDNKVHKKFAWSNYFEKEALPISLIAFLIGIS 226 Query: 158 YASILAFINSYALSLSLMDAAAFFFVIYSAFIIISRLFTGRLLDNRGDNIVMYPAXXXXX 217 Y+SIL+F+++YA ++ L +AA+FFF++Y+ +++SR TGR+ D GDN VMYP Sbjct: 227 YSSILSFMDAYARNIHLSEAASFFFLVYAITVLLSRPITGRVFDGFGDNFVMYPTYLFFA 286 Query: 218 XXXXXISKAGDSFTXXXXXXXXXXXXXTIMSCAQVIAANNSPQHRMGIATSTFFFCADLG 277 I A + + Q IA NS HR+GI TSTFF D+G Sbjct: 287 LGLLLIGFAHSGWMLLLAAIFIGLGYGSFSPFGQAIAIRNSEAHRLGITTSTFFGFMDMG 346 Query: 278 VGAGSFFAGEIVSMTGFRDMYMVMAIIVALSILLYYILHGRKTASDK 324 VG G F G + + G+R++Y AI+ L ++Y+ +HGR + Sbjct: 347 VGFGPFILGMFMPLLGYRNLYFASAILALLIAVIYHFVHGRHAKREN 393 >ref|NP_470554.1| similar to antibiotic resistance protein [Listeria innocua] pir||AH1584 antibiotic resistance protein homolog lin1217 [imported] - Listeria innocua (strain Clip11262) emb|CAC96448.1| lin1217 [Listeria innocua] Length = 401 Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 90/326 (27%), Positives = 170/326 (52%) Query: 1 MEVIGRRKXXXXXXXXXXXXXXXXXXVYDLNMLLVVRFVHGVIFGVATTAIPTVIMGMIP 60 +E+ GR++ + + ++ ++RF++G +G +TA ++ IP Sbjct: 68 LELFGRKQVLRFGILFFLVTTMAYLYMPTIAIMFIIRFLNGFAYGTTSTATNAIVTAYIP 127 Query: 61 RERRGEGVGYFTLSGTMASAIGPFLGLVIREQANFTTMFVVCAVFYVISIIVTAFADIPE 120 R GEG+ Y+ LS ++A+AIGPF+G+++ + +F T+ + V +++ ++ + + Sbjct: 128 NSRNGEGINYYGLSTSLAAAIGPFIGMILLSKTSFYTIIIFSTVIVLLTALLCFYLPVKN 187 Query: 121 VVMTKEQLEVVKGFRLQDFFEKTAMPVSIVMLFVGMAYASILAFINSYALSLSLMDAAAF 180 +V+TKE ++ + ++ F E +P++ + +G++Y+S+L F+ SYA ++L+ A F Sbjct: 188 IVLTKEHRTALQTWTVKSFIETKVIPITFIAFLMGISYSSVLTFLASYAREINLVSAGTF 247 Query: 181 FFVIYSAFIIISRLFTGRLLDNRGDNIVMYPAXXXXXXXXXXISKAGDSFTXXXXXXXXX 240 FFV+Y+ I +R +G+L D +G+ VMYP+ +S A S Sbjct: 248 FFVVYALVITFTRPMSGKLFDAKGEKYVMYPSYLFLAVGLVVLSTATSSIVLLISGGLIG 307 Query: 241 XXXXTIMSCAQVIAANNSPQHRMGIATSTFFFCADLGVGAGSFFAGEIVSMTGFRDMYMV 300 T MS Q + HR+GI ST+F DLG+G G + GEI + F+ +Y++ Sbjct: 308 LGYGTFMSNGQAVCLKVCEPHRIGIGLSTYFIGLDLGLGIGPYIMGEIHHVLSFQGIYII 367 Query: 301 MAIIVALSILLYYILHGRKTASDKHS 326 I + + +Y L +K +S H Sbjct: 368 AGAIAFVCVFIYMFLSRKKVSSGAHE 393 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 362,658,922 Number of extensions: 12335369 Number of successful extensions: 56686 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 56645 Number of HSP's successfully gapped: 61 Length of query: 331 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 205 Effective length of database: 415,135,104 Effective search space: 85102696320 Effective search space used: 85102696320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)