BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0018.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656437.1| hypothetical protein predicted by GeneMark [Bac... 225 4e-58 ref|NP_978880.1| conserved hypothetical protein [Bacillus cereus... 219 3e-56 ref|NP_832270.1| hypothetical protein [Bacillus cereus ATCC 1457... 218 6e-56 ref|NP_241919.1| BH1053~unknown conserved protein in others [Bac... 207 9e-53 ref|NP_295398.1| hypothetical protein [Deinococcus radiodurans] ... 202 5e-51 >ref|NP_656437.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844936.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26422.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 186 Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 107/178 (60%), Positives = 133/178 (74%), Gaps = 1/178 (0%) Query: 13 MKVVIGAGQTKYD-GWLSTQEDELNLLALDSWIKLSAPESIDALLAEHVWEHLTYEEGVT 71 +KVV+GAG + GW+ TQEDELNLL +W + SI A+LAEHVWEHLT+EEGV Sbjct: 8 IKVVVGAGAFNNNPGWIQTQEDELNLLNKATWKERFEYNSISAILAEHVWEHLTFEEGVR 67 Query: 72 AAKHCYQFLKPGGYIRCAVPDKNFRNDWYQQMVQVGGPGPADHPAASHKIVYDAKTFVSV 131 AA+ CY+FLKP G+IRC VPD FR++ YQ +VQ+GGPGP DHPAASHKIV++ KT + Sbjct: 68 AARICYEFLKPTGHIRCGVPDAFFRDEVYQNIVQIGGPGPKDHPAASHKIVHNYKTLTKM 127 Query: 132 FEMVGFEVTLLEYCDDNGDFYYTYWNETDGKIGRSFRFDTRNSINELGMVSIIIDAKK 189 FE GFEV LLEYCD+NG FYY W+ DG I RS R+D+RN ++LG S+I+DA K Sbjct: 128 FETAGFEVVLLEYCDENGKFYYNEWDANDGVIFRSKRYDSRNKGDKLGFPSLIVDAIK 185 >ref|NP_978880.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41488.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 186 Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 106/178 (59%), Positives = 131/178 (73%), Gaps = 1/178 (0%) Query: 13 MKVVIGAGQTKYD-GWLSTQEDELNLLALDSWIKLSAPESIDALLAEHVWEHLTYEEGVT 71 +KVV+GAG + GW+ TQEDELNLL +W + SI A+LAEHVWEHLT+EEGV Sbjct: 8 IKVVVGAGMFNNNPGWIQTQEDELNLLDKATWEERFEYNSISAILAEHVWEHLTFEEGVR 67 Query: 72 AAKHCYQFLKPGGYIRCAVPDKNFRNDWYQQMVQVGGPGPADHPAASHKIVYDAKTFVSV 131 AA+ CY+FLK G+IRC VPD FR++ YQ++VQ+GGPGP DHPAASHKIV+ KT + Sbjct: 68 AAEICYEFLKQEGHIRCGVPDAFFRDEAYQKIVQIGGPGPKDHPAASHKIVHTYKTLTKM 127 Query: 132 FEMVGFEVTLLEYCDDNGDFYYTYWNETDGKIGRSFRFDTRNSINELGMVSIIIDAKK 189 FE GFEV LLEYCD+NG FYY W+ DG I RS R+D RN ++LG S+I+DA K Sbjct: 128 FETAGFEVVLLEYCDENGQFYYNEWDANDGVIFRSKRYDPRNKGDKLGFPSLIVDAIK 185 >ref|NP_832270.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP09471.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 187 Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 105/178 (58%), Positives = 131/178 (73%), Gaps = 1/178 (0%) Query: 13 MKVVIGAGQTKYD-GWLSTQEDELNLLALDSWIKLSAPESIDALLAEHVWEHLTYEEGVT 71 +KVV+GAG + GW+ TQEDELNLL +W SI A+LAEHVWEHLT+EEGV Sbjct: 9 IKVVVGAGVFNNNPGWIQTQEDELNLLDKATWEGRFEYNSISAILAEHVWEHLTFEEGVR 68 Query: 72 AAKHCYQFLKPGGYIRCAVPDKNFRNDWYQQMVQVGGPGPADHPAASHKIVYDAKTFVSV 131 AA+ CY+FLKP G+IRC VPD F+++ YQ +VQ+GGPGP DHPAASHKIV++ T + Sbjct: 69 AAEICYEFLKPSGHIRCGVPDAFFQDEAYQNIVQIGGPGPKDHPAASHKIVHNYITLTKM 128 Query: 132 FEMVGFEVTLLEYCDDNGDFYYTYWNETDGKIGRSFRFDTRNSINELGMVSIIIDAKK 189 FE GFEV LLEYCD+NG FYY W+ DG I RS R+D+RN ++LG S+I+DA K Sbjct: 129 FETAGFEVVLLEYCDENGRFYYNEWDANDGVIFRSKRYDSRNKGDKLGFPSLIVDAIK 186 >ref|NP_241919.1| BH1053~unknown conserved protein in others [Bacillus halodurans] pir||E83781 hypothetical protein BH1053 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04772.1| BH1053~unknown conserved protein in others [Bacillus halodurans] Length = 182 Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 104/180 (57%), Positives = 127/180 (70%), Gaps = 1/180 (0%) Query: 13 MKVVIGAGQTKYD-GWLSTQEDELNLLALDSWIKLSAPESIDALLAEHVWEHLTYEEGVT 71 +KVV+GAG + GW+ TQE++L+LL W K PESI A+LAEHVWEHLT+ EGV Sbjct: 3 LKVVVGAGPYNNNPGWIHTQEEKLSLLDRSMWEKRFTPESISAILAEHVWEHLTFREGVE 62 Query: 72 AAKHCYQFLKPGGYIRCAVPDKNFRNDWYQQMVQVGGPGPADHPAASHKIVYDAKTFVSV 131 AA CY FLKP GYIRCAVPD FR++ YQ +VQVGGPGP DHPAASHKIV+ +T ++ Sbjct: 63 AANICYDFLKPSGYIRCAVPDGFFRDETYQAVVQVGGPGPKDHPAASHKIVHTYETISNM 122 Query: 132 FEMVGFEVTLLEYCDDNGDFYYTYWNETDGKIGRSFRFDTRNSINELGMVSIIIDAKKPL 191 F+ GF V LLEY D+NG F WN DG I RS +FD RN ++ S+I+DA KPL Sbjct: 123 FKEAGFTVKLLEYFDENGAFLCEDWNGEDGVIFRSKKFDPRNQGEQIVFPSLIVDAIKPL 182 >ref|NP_295398.1| hypothetical protein [Deinococcus radiodurans] pir||F75368 hypothetical protein - Deinococcus radiodurans (strain R1) gb|AAF11235.1| hypothetical protein [Deinococcus radiodurans] Length = 195 Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 92/178 (51%), Positives = 120/178 (67%) Query: 13 MKVVIGAGQTKYDGWLSTQEDELNLLALDSWIKLSAPESIDALLAEHVWEHLTYEEGVTA 72 +V+IGAG+ +++GW T+ +L+L S+ + DA L EHVWEHLT EG A Sbjct: 5 FQVIIGAGEQRWNGWQPTERADLDLTDRASFERFFGTRRADAFLCEHVWEHLTEAEGRAA 64 Query: 73 AKHCYQFLKPGGYIRCAVPDKNFRNDWYQQMVQVGGPGPADHPAASHKIVYDAKTFVSVF 132 A+ C++FL+PGG++RCAVPD NF + YQ+ VQVGGPGP DHPAA H+IVYD + VF Sbjct: 65 ARLCFEFLRPGGWLRCAVPDANFPDAEYQRTVQVGGPGPTDHPAADHRIVYDFRLLRDVF 124 Query: 133 EMVGFEVTLLEYCDDNGDFYYTYWNETDGKIGRSFRFDTRNSINELGMVSIIIDAKKP 190 E GFEV LLEYCD+ G F+ W G I RS R D RN +LG VS+I++A+KP Sbjct: 125 ESAGFEVKLLEYCDEQGHFHAEDWEIESGPIYRSLRMDHRNREGKLGFVSLILEARKP 182 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 352,090,470 Number of extensions: 15297443 Number of successful extensions: 31123 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 31123 Number of HSP's successfully gapped: 12 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)