BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0016.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||S72642 probable ABC-type transport protein xynB - Thermoana... 221 2e-56 ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 211 2e-53 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 195 1e-48 ref|NP_814960.1| ABC transporter, permease protein [Enterococcus... 189 6e-47 ref|NP_764660.1| maltose/maltodextrin transport permease [Staphy... 166 8e-40 >pir||S72642 probable ABC-type transport protein xynB - Thermoanaerobacterium thermosulfurigenes gb|AAB08045.1| XynB [Thermoanaerobacterium thermosulfurigenes] Length = 301 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 114/290 (39%), Positives = 171/290 (58%), Gaps = 4/290 (1%) Query: 8 KDLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLD 67 +D++ D+I Y +L ++++ LYPF +VL SFN D++ GG+YL+PR FT NY L Sbjct: 12 EDIVFDTINYILLTIVIIVTLYPFVHVLAVSFNDAIDTVRGGIYLFPRKFTTFNYVSILS 71 Query: 68 DPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIP 127 DP+ Y A I++ +R RD + + I ++MYF+ GLIP Sbjct: 72 DPEIYNATIISALRAVIGSVLNVIASIIVAYAISRRDFVLRGIVSKIFTYSMYFTSGLIP 131 Query: 128 YYVVLRSIGLLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRI 187 YY+++R + L+N+F VYI+P ++S + +++ S+ +P L ESA IDGA E I F I Sbjct: 132 YYLLIRDLHLMNNFLVYILPGIVSAWNIMVVRSYIDGLPASLVESAKIDGASELRIIFSI 191 Query: 188 ILPVSMPLLATMALFLGVGQWNSWLDSAYFVQ-SENLRTLAFRMMEVINKSN---SPMDX 243 I P+S+P+LAT+ LF+ VGQWNSW D+ F + NL TL + + +V+ + Sbjct: 192 IFPLSVPVLATITLFVAVGQWNSWFDTMLFCSMNPNLSTLQYELQKVLQSTQQFTQQASF 251 Query: 244 XXXXXXXXXGVTSFSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVKG 293 VT S++ VV++VPI+ VYPFLQKYFV G+ +GSVKG Sbjct: 252 DMGLRNNSNSVTPESIRAAMTVVAVVPIMMVYPFLQKYFVKGLTIGSVKG 301 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 6/295 (2%) Query: 4 SQRQKDLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYK 63 + + D L D Y L +++L LYPF VL S N D++ GG+Y+WPR FTLENY+ Sbjct: 2 TGKWGDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYR 61 Query: 64 MFLDDPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSG 123 + + FI +V+R D K II+ +YFSG Sbjct: 62 VIFEYDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSG 121 Query: 124 GLIPYYVVLRSIGLLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVI 183 GLIP Y+++R + L+N+F VY++P M++ F ++I SF +P L+ESA IDGA +F I Sbjct: 122 GLIPGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTI 181 Query: 184 FFRIILPVSMPLLATMALFLGVGQWNSWLDSAYFVQSE-NLRTLAFRMMEVI-NKSNSPM 241 F+RIILP+ P+LAT+ALF+ VGQWN+W D+ + S NL TL + +M+++ N + S Sbjct: 182 FWRIILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSAS 241 Query: 242 DXXXXXXXXXXG----VTSFSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVK 292 D V+ S+++ +++I+PI+ VYPF+Q++FV G+ LG+VK Sbjct: 242 DANAFRGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVK 296 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 8/299 (2%) Query: 3 KSQRQKDLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENY 62 K + D + DS+ + L+ + MLYP L S N +D++ GG+Y WPR FT N+ Sbjct: 10 KRRGADDFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYFWPREFTWYNF 69 Query: 63 KMFLDDPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFS 122 + + A +++V+R + + K + MY + Sbjct: 70 EHVFSQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAFVLTMYLN 129 Query: 123 GGLIPYYVVLRSIGLLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFV 182 GGLIP Y+++R + L+ +F +YIIP ++ F L++ SF +P + ESA IDGAGEF Sbjct: 130 GGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKIDGAGEFT 189 Query: 183 IFFRIILPVSMPLLATMALFLGVGQWNSWLDS-AYFVQSENLRTLAFRMMEVINKSNSPM 241 FF+I LP+ +P++AT++LF+ VGQWNSW D Y L TL + +M+++ SN+ M Sbjct: 190 QFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKILQNSNASM 249 Query: 242 DXXXXXXX-------XXXGVTSFSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVKG 293 VT S++ ++ VPIICVYPFLQKYFV G+ LG VKG Sbjct: 250 SSGSAASAFASSQSGVVETVTPQSVRAAMTIIVSVPIICVYPFLQKYFVKGLTLGGVKG 308 >ref|NP_814960.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81030.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 293 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 100/274 (36%), Positives = 163/274 (59%) Query: 19 VLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLDDPKWYRAFIVT 78 +L L L ++ P + +L++S + S G+ LWP+ FTLENY+ D RAF+++ Sbjct: 19 ILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLENYRKVFSDSSIPRAFLIS 78 Query: 79 VVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIPYYVVLRSIGLL 138 V++ L+ +Y + + MYF GG+IP Y++++S+GLL Sbjct: 79 VLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMYFGGGMIPTYLLIKSLGLL 138 Query: 139 NSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRIILPVSMPLLAT 198 ++F VYIIP++ S + ++I ++FFREIP L+ESA IDGA EF IF++I LP++ P LAT Sbjct: 139 DTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASEFQIFYKIFLPLTKPALAT 198 Query: 199 MALFLGVGQWNSWLDSAYFVQSENLRTLAFRMMEVINKSNSPMDXXXXXXXXXXGVTSFS 258 + LF GVGQWN ++ + ++ E L L ++ E+I +SN T+ Sbjct: 199 IILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLSTMTESGSTDMVVQATTRG 258 Query: 259 LQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVK 292 +Q+ +V++ +PI+ +YP LQK+F+ G+M G+VK Sbjct: 259 VQLATIVITTIPILIIYPLLQKHFIGGMMAGAVK 292 >ref|NP_764660.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] gb|AAO04702.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] Length = 302 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/268 (30%), Positives = 147/268 (54%), Gaps = 5/268 (1%) Query: 30 PFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLDDPKWYRAFIVTVVRXXXXXXXX 89 P + +FN G D+ GG+ +PR F+L+N+K A +++ + Sbjct: 34 PMINIFALAFNSGVDAQKGGITFYPRKFSLDNFKEIFKQGTLLNALFISIAKTVIGTILS 93 Query: 90 XXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIPYYVVLRSIGLLNSFGVYIIPSM 149 + L F ++ ++F M FS G++P Y++L + L ++F VYI+PS+ Sbjct: 94 VILTAMAAYVLTIKSLPFRRIISFFLVFTMLFSVGVVPLYILLNQLHLTDTFWVYILPSL 153 Query: 150 LSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRIILPVSMPLLATMALFLGVGQWN 209 S + +LI +FF ++P + E+A +DG +F IF++I+LP+S P++A++ LF V QWN Sbjct: 154 YSVYNILIMRTFFNQLPSSVIEAARVDGCNDFQIFWKIVLPMSKPVVASITLFNAVSQWN 213 Query: 210 SWLDSAYFVQSENLRTLAFRMMEVINKSNSPMDXXXX-----XXXXXXGVTSFSLQVTAM 264 W A+FV++ NL+ LA + +++ K + D +T S+Q+ + Sbjct: 214 DWFTGAFFVRNPNLKPLATVLQDMLTKQAAIADALKQKSGSYAMLDKLTITGDSMQMAMI 273 Query: 265 VVSIVPIICVYPFLQKYFVHGIMLGSVK 292 V+ +P++ ++PF+QK+FV GI +GS K Sbjct: 274 VLLTIPVLFLFPFVQKHFVKGITIGSTK 301 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.146 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 361,841,149 Number of extensions: 12781535 Number of successful extensions: 52190 Number of sequences better than 1.0e-05: 1093 Number of HSP's gapped: 50933 Number of HSP's successfully gapped: 1093 Length of query: 293 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 169 Effective length of database: 420,565,302 Effective search space: 71075536038 Effective search space used: 71075536038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)