BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0542.0009.p
         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||JQ1936 xylan 1,4-beta-xylosidase (EC 3.2.1.37) [validated] ...   218   5e-56
sp|P48790|XYLA_CLOSR Xylosidase/arabinosidase [Includes: Beta-xy...   217   6e-56

>pir||JQ1936 xylan 1,4-beta-xylosidase (EC 3.2.1.37) [validated] - Clostridium
           stercorarium
          Length = 473

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 110/137 (80%)

Query: 14  KKQGFNPYLPSWEYIPDGEPYVFEGRVYVYGSHDRFNGHAFCLNDYVCWSAPEDNLADWR 73
           +KQ FNPYLPSWEYIPD EPYVF GRVY+YGSHDRFNGHAFCLNDYVCWSAP D+L++WR
Sbjct: 2   RKQRFNPYLPSWEYIPDAEPYVFNGRVYIYGSHDRFNGHAFCLNDYVCWSAPVDDLSEWR 61

Query: 74  YEGVIYRTTDDPLNPEGSMCLYAPDVTVGPDGRXXXXXXXXXXXXXXXXXXXXPGGKYKF 133
           YEGVIYR TDDPLNP+G MCLYAPDVT+GPDGR                    P GKY+F
Sbjct: 62  YEGVIYRKTDDPLNPDGRMCLYAPDVTLGPDGRYYLYYVLDKVPVVSVAVCDTPAGKYEF 121

Query: 134 YGYVRYADGTRLGEREG 150
           YGYVRYADGTRLGEREG
Sbjct: 122 YGYVRYADGTRLGEREG 138


>sp|P48790|XYLA_CLOSR Xylosidase/arabinosidase [Includes: Beta-xylosidase
           (1,4-beta-D-xylan xylohydrolase) (Xylan
           1,4-beta-xylosidase); Alpha-L-arabinofuranosidase
           (Arabinosidase)]
 dbj|BAA02527.1| xylosidase [Clostridium stercorarium]
 prf||1909151A beta xylosidase
          Length = 473

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 110/137 (80%)

Query: 14  KKQGFNPYLPSWEYIPDGEPYVFEGRVYVYGSHDRFNGHAFCLNDYVCWSAPEDNLADWR 73
           +KQ FNPYLPSWEYIPD EPYVF GRVY+YGSHDRFNGHAFCLNDYVCWSAP D+L++WR
Sbjct: 2   RKQRFNPYLPSWEYIPDAEPYVFNGRVYIYGSHDRFNGHAFCLNDYVCWSAPVDDLSEWR 61

Query: 74  YEGVIYRTTDDPLNPEGSMCLYAPDVTVGPDGRXXXXXXXXXXXXXXXXXXXXPGGKYKF 133
           YEGVIYR TDDPLNP+G MCLYAPDVT+GPDGR                    P GKY+F
Sbjct: 62  YEGVIYRKTDDPLNPDGRMCLYAPDVTLGPDGRYYLYYVLDKVPVVSVAVCDTPAGKYEF 121

Query: 134 YGYVRYADGTRLGEREG 150
           YGYVRYADGTRLGEREG
Sbjct: 122 YGYVRYADGTRLGEREG 138


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 249,015,906
Number of extensions: 10195693
Number of successful extensions: 14250
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14250
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 757,237,578
Length adjustment: 115
Effective length of query: 45
Effective length of database: 445,001,193
Effective search space: 20025053685
Effective search space used: 20025053685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)