BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0100.p (544 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00053091.1| COG2200: FOG: EAL domain [Magnetospirillum ma... 158 3e-37 ref|ZP_00042806.1| COG2200: FOG: EAL domain [Magnetococcus sp. M... 153 9e-36 ref|ZP_00052706.1| COG2202: FOG: PAS/PAC domain [Magnetospirillu... 149 2e-34 ref|NP_522716.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 147 5e-34 ref|NP_742833.1| sensory box protein [Pseudomonas putida KT2440]... 145 2e-33 >ref|ZP_00053091.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum] Length = 800 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 12/291 (4%) Query: 262 IILTDSNGQILYASPSHSSLLGY----LPGRGTPLTNYIREAEITWVKLKSVVQS----T 313 +++TD+ G I Y + + + GY + GR L ++ E + + Q Sbjct: 261 VMITDAQGAIEYVNRAFVLVSGYSEDEVLGRNPRL---LKSGETVASVFRDMWQCLSGGA 317 Query: 314 PRISELRMRAGDGHWVWLETKVTPIKGGGAVPAQFMLVSREITERKQHEERLHKLAFYDH 373 EL RA DG W ++PI+ V +M V IT+RK+ E++L A +D Sbjct: 318 TWQGELCNRAKDGSLFWEYATISPIRDDDGVTTHYMAVKENITQRKETEQQLVHQATHDT 377 Query: 374 LTAIPNRAHFKMYMENLISQPEERKQEIALALLDCDRFKQLNDTLGHLAGDEFLQLLSRE 433 LT +PNR + + + I + + I L LD DRFK +ND+LGH+AGD+ L++++ Sbjct: 378 LTGLPNRLLLEDRVHHAIEVAKREGRRIGLMFLDLDRFKIVNDSLGHVAGDQLLKVVADR 437 Query: 434 LQQTVKGTGQAFRIGGDEFAVVLHRFASPEMLDEILDRLLQLFNKSWSVNKGSSFHTSAS 493 L+ T++ + R+GGDEF VVL F S L E+ +++ ++ ++ G H AS Sbjct: 438 LRHTLRRSDTVARLGGDEFVVVLTHFQSSSELAEVAEKISTALDEPVELS-GHKVHVGAS 496 Query: 494 IGVALYPQHGSSINELLRAADLAMYRSKKHGGNEANLYSELVDEEYKDQPK 544 IG+AL+P+ G N L++ AD AMYR+K+ G N Y +++E D+ K Sbjct: 497 IGIALFPEDGDDFNSLMKDADTAMYRAKQKGRNTFCFYDSNMNDEALDRLK 547 >ref|ZP_00042806.1| COG2200: FOG: EAL domain [Magnetococcus sp. MC-1] Length = 754 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 153/298 (51%), Gaps = 24/298 (8%) Query: 250 LYQLIGETMSDFIILTDSNGQILYASPSHSSLLGYLPGRGTPLTNYIREAEITWVKLKSV 309 L + E S+ IILTD G IL +P+ + + G+ R L + R KS Sbjct: 188 LIHKVFENTSEAIILTDPQGMILDINPAFTEITGF--SREEALGHNPR-------SFKSD 238 Query: 310 VQSTPRISEL-RMRAGDGHW---VWLETK----------VTPIKGGGAVPAQFMLVSREI 355 + + R A +G W +W K + ++ ++ + +I Sbjct: 239 RHDATFYTNMWRKIAEEGFWQGEIWDRRKNGEIYPKRLTINAVRNQAGEVENYIGIFSDI 298 Query: 356 TERKQHEERLHKLAFYDHLTAIPNRAHFKMYMENLISQPEERKQEIALALLDCDRFKQLN 415 +E K E +L +LA+YD LT +PNR F +E+ + ++++A+ +D DRFKQ+N Sbjct: 299 SESKATELKLERLAYYDALTQLPNRMLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFKQVN 358 Query: 416 DTLGHLAGDEFLQLLSRELQQTVKGTGQAFRIGGDEFAVVLHRFASPEMLDEILDRLLQL 475 DTLGH AGDE LQ +++ L+ V+ R+GGDEF V+L + E + + ++L+ Sbjct: 359 DTLGHSAGDELLQHVAQRLEGCVRAADTVARMGGDEFTVILADISDNESVARVARKVLEE 418 Query: 476 FNKSWSVNKGSSFHTSASIGVALYPQHGSSINELLRAADLAMYRSKKHGGNEANLYSE 533 KS S+ KG ASIG+ALYP +G+ + L + AD+AMYR+K+ G +SE Sbjct: 419 LQKSISI-KGHDIFVGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSE 475 >ref|ZP_00052706.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum] Length = 574 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 154/297 (51%), Gaps = 24/297 (8%) Query: 246 EEKSLYQLIGETMSDFIILTDSNGQILYASPSHSSLLGYLP----GRGTPLTNYIREAEI 301 E +++ LI +D +++TD+ I +P+ S + G+ P GR + + R E Sbjct: 280 EAATVFNLI----TDAVMVTDARNHIKLVNPAFSRITGFGPDEVIGRSPSILSSGRHDES 335 Query: 302 ----TWVKLKSVVQSTPRISELRMRAGDGHWVWLETKVTPIKGGGAVPAQFMLVSREITE 357 W +L S + I R ++G+ + WL +T I+ G ++ I E Sbjct: 336 FYGGMWARLTSEGNWSGEIWN-RAKSGEVYPEWL--SITAIRDRGGETHGYVATFSNIAE 392 Query: 358 RKQHEERLHKLAFYDHLTAIPNRAHFKMYMENLISQPEERKQEIALALLDCDRFKQLNDT 417 RK+ E R+ A +D LT + NR +F+ + +SQ E ++ L +D D FK++ND+ Sbjct: 393 RKRSETRMRWQAEHDALTGLANRPYFETALAVALSQARENDDDLGLLFIDLDGFKEINDS 452 Query: 418 LGHLAGDEFLQLLSRELQQTVKGTGQAFRIGGDEFAVV---LHRFASPEMLDE-ILDRLL 473 LGH AGD L +++ LQQ V+ R+GGDEFAVV LHR A + + E I+ RL Sbjct: 453 LGHAAGDSVLAAVAKRLQQVVRSDDLVARMGGDEFAVVIPKLHREADAQHIAEKIVSRLS 512 Query: 474 QLFNKSWSVNKGSSFHTSASIGVALYPQHGSSINELLRAADLAMYRSKKHGGNEANL 530 + F G ASIG+ALYP HG+S +L AAD AMYR K+ G N +L Sbjct: 513 EPFAVG-----GVQARIGASIGIALYPHHGTSPEQLTSAADGAMYRRKQKGRNGVSL 564 >ref|NP_522716.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] emb|CAD18306.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] Length = 915 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 160/304 (52%), Gaps = 18/304 (5%) Query: 244 MLEEKSLYQLIGETMSDFIILTDSNGQILYASPSHSSLLGYLPGRGTP----------LT 293 + E + Y+L +++ +++ +G +L A+ S +L PG+ + Sbjct: 339 LAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRNRFDMMQRVVD 398 Query: 294 NYIREAEITWVKLKSVVQSTP----RISELRMRAGDGHWVWLETKVTPIK-GGGAVPAQF 348 + ++ + + K V QS RI L ++ G+ +W + PI+ G A P+ Sbjct: 399 EHGKDVALDVLPSKLVRQSGEAILGRIYGLLLKTGE--LIWARMNIIPIRRHGDAAPSSI 456 Query: 349 MLVSREITERKQHEERLHKLAFYDHLTAIPNRAHFKMYMENLISQPEERKQEIALALLDC 408 ML +IT+ K+ E+RL LA +D LT + NR+ F ++++ I + + +E+AL LD Sbjct: 457 MLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERARDESRELALFFLDL 516 Query: 409 DRFKQLNDTLGHLAGDEFLQLLSRELQQTVKGTGQAFRIGGDEFAVVLHRFASPEMLDEI 468 DRFK +NDT GH GD LQ + L + R+GGDEF +++ + + + ++ Sbjct: 517 DRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQRVEGKRIAQL 576 Query: 469 LDRLLQLFNKSWSVNKGSSFHTSASIGVALYPQHGSSINELLRAADLAMYRSKKHGGNEA 528 +RLL + + G ++ SIGVALYP G S ++LLR+AD AMYR+K++G N A Sbjct: 577 AERLLAAMREPFDTVNG-RYYLGVSIGVALYPHDGISGSDLLRSADAAMYRAKQNGRNRA 635 Query: 529 NLYS 532 Y+ Sbjct: 636 QFYT 639 >ref|NP_742833.1| sensory box protein [Pseudomonas putida KT2440] gb|AAN66297.1| sensory box protein [Pseudomonas putida KT2440] Length = 1276 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 28/296 (9%) Query: 254 IGETMSDFIILTDSNGQILYASPSHSSLLGY--------LPGRGTPLTNYIREAEITWVK 305 + E + I++TD G I+ A+ + S + GY LPG T + +E + +V Sbjct: 721 VFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT--VDEQQEGHLRYV- 777 Query: 306 LKSVVQSTPRISE--LRMRAGDGHWVWLETKVTPIKGGGAVPAQFMLVSREITERKQHEE 363 +K + Q E L+ R GD + W+ +T + A ++ +I+ERK E+ Sbjct: 778 VKQLHQRGSWEGEVWLKRRDGDHYPAWV--GITAVLDDEGDLASYVCFFTDISERKASEQ 835 Query: 364 RLHKLAFYDHLTAIPNRAHFKMYMENLISQPEERKQEIALALLDCDRFKQLNDTLGHLAG 423 R+H+LA+YD LT +PNR F+ + N + Q E +K + L LD DRFK +ND+LGH AG Sbjct: 836 RIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAG 895 Query: 424 DEFLQLLSRELQQTVKGTGQAFRIGGDEFAVVLHRFASPEM--------LDEILDRLLQL 475 D L+ ++ L V R+GGDEF ++L + EM + IL L++ Sbjct: 896 DRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRP 955 Query: 476 FNKSWSVNKGSSFHTSASIGVALYPQHGSSINELLRAADLAMYRSKKHGGNEANLY 531 F V + F +ASIG+AL PQ GS +++L++ AD AMY +K+ G N Y Sbjct: 956 F-----VLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFY 1006 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 739,451,368 Number of extensions: 28795285 Number of successful extensions: 85334 Number of sequences better than 1.0e-05: 2139 Number of HSP's gapped: 82954 Number of HSP's successfully gapped: 2140 Length of query: 544 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 413 Effective length of database: 401,559,609 Effective search space: 165844118517 Effective search space used: 165844118517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)