BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0097.p (815 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834266.1| Phenylalanyl-tRNA synthetase beta chain [Bacill... 745 0.0 ref|NP_980979.1| phenylalanyl-tRNA synthetase, beta subunit [Bac... 744 0.0 ref|NP_658588.1| tRNA_bind, Putative tRNA binding domain [Bacill... 741 0.0 ref|NP_243976.1| phenylalanyl-tRNA synthetase beta subunit [Baci... 722 0.0 ref|NP_390741.1| phenylalanyl-tRNA synthetase (beta subunit) [Ba... 719 0.0 >ref|NP_834266.1| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus ATCC 14579] sp|Q817I7|SYFB_BACCR Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) gb|AAP11467.1| Phenylalanyl-tRNA synthetase beta chain [Bacillus cereus ATCC 14579] Length = 806 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/816 (48%), Positives = 543/816 (66%), Gaps = 11/816 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL +Y+ ++ VTA ELAD+IT +GIE++GVE NKG+ G+VVG+V EKHP+A Sbjct: 1 MFVSYRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKL+ C++D G+ E +QI+CGA N+A G KVPVA VGA LPG +IKKAKLRG S GM+ Sbjct: 61 DKLSKCLIDIGEEEPVQIICGAANIAKGLKVPVAKVGAVLPGNFKIKKAKLRGEASHGMV 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLGLNDEILDFDLTPNRSDCLSMI 179 C+ +ELG++ KL+ KE +GI + P + E+G D L++L L+DE+L+ LTPNR+DCL+M+ Sbjct: 121 CALQELGIDGKLVSKEYADGIFIFPSDAEVGADALEILNLHDEVLELGLTPNRADCLNML 180 Query: 180 GAAYEVSAILGRDLKLPDPAADLVEAGGLASDSISVKIENEEYCRHYSVRYISGVKPAPS 239 G AYEV+AI GR++KLP A DL E SD ISV +E +E Y + + VK PS Sbjct: 181 GVAYEVAAIYGREVKLP--AIDLQETAEKTSDYISVSVEAKEENPLYIAKMVKNVKIGPS 238 Query: 240 PLWIQNRLMAAGVRPINNIVDITNYVMLEYGQPLHAFDGDKVEGGVLGVRFAREGELLTT 299 P+W+Q RLMAAG+RPI+N+VDITNY+++EYGQPLHAFD DK+ + VR A+EGE + T Sbjct: 239 PMWMQTRLMAAGIRPISNVVDITNYILMEYGQPLHAFDYDKLGSKEIVVRLAKEGEKIET 298 Query: 300 LDGQERKLEPQMLVIADGAGKAVALAGVMGGLETEVTEATVNLVLESAKFDGGTVRKTSR 359 LD QER L+ LVI +G KA+A+AGVMGG ++EVT TVN+++ESA F G TVR+TS+ Sbjct: 299 LDDQERTLQSHHLVITNGT-KALAVAGVMGGADSEVTNETVNVLIESAYFAGQTVRRTSK 357 Query: 360 QLGLRSEASLRFEKEVDPNAVIPALNRAAALIARYAGGTVHTGIVQAGTAAAEEKVLTLS 419 LGLRSE+S RFEK +DP A+ AAAL+A+YAGG G+V+A +E+ ++++ Sbjct: 358 DLGLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSVT 417 Query: 420 LEKLNRYLGTDLSLLEVKTLLTRLHFKCGDADQGLVEVQVPTRRGDISYDVDLIEEVARL 479 EK+NR LGT++S E+ T+ T L F + +G V VP RR DI+ DL+EEV RL Sbjct: 418 AEKVNRVLGTNISASEMGTMFTNLKFPFTEV-EGTFHVNVPARRPDITISEDLVEEVGRL 476 Query: 480 YGYDNIPTTLIEGVTTPGALTSRQFQXXXXXXXXADGGFQEVMGYSFIQPEQSKLFPALA 539 YGYD+IP TL G T G LTS Q + G E + YS +++K + Sbjct: 477 YGYDHIPVTLPSGTMTRGKLTSAQTKRRKVRRFLEGAGLYEAITYSLTSADKAKQYMVEP 536 Query: 540 DGLLPVKLAMPMSEERSVLRTSLIPQLLDIARYNTNRRQSDLALFEIGNVFFTDEEQLTR 599 + PV LA+PMSEERS LR SL+PQLL+ YN R+ +AL+E+G++F EE Sbjct: 537 NEKAPVGLALPMSEERSQLRLSLVPQLLEAVSYNVARKNDSVALYEVGSIFLPTEE--GE 594 Query: 600 QPRELPVLGLLLSGSRASKQWNVEEQPVDFFDLKGALETVFNYLGLGDSVSYEGDAPENY 659 P+E L +++G W E++ VDFF +KG LE +F+ LG+ + ++Y E Sbjct: 595 LPKEEQHLAGVMTGLALHHAWQGEKKVVDFFVVKGVLEGLFDVLGVANQITYAPAKREGM 654 Query: 660 HPGRSASIYLQGPEGRVKLGTLGQLHPELQRELDLEDTYVAELLLQPLYSAARTNLQYTE 719 HPGR+A I L G +G +GQLHPE +++LD+++T+V EL L ++ A Y Sbjct: 655 HPGRTADIVLDGE----VIGFIGQLHPEAEKQLDVKNTFVFELSLVKVFGADAEETYYAA 710 Query: 720 LQRFPGIERDIAVVVDSAVPAGHLLASIRENGGTLLQNVQVFDVYTGGKMESGKKSIAIS 779 + RFP + RD+AVVV AG + I E GG LL++V +FD+Y G KME GKKS+A S Sbjct: 711 IPRFPSMTRDMAVVVTKETKAGEMKQVIAEAGGELLKDVTLFDLYEGEKMEEGKKSLAFS 770 Query: 780 LLYRHTDHTLTDXXXXXXHDKVVSALQQTFGAELRK 815 + Y + TLTD H++V++ +++ FGAELRK Sbjct: 771 MTYFDAERTLTDEEVTEAHNRVLTTVEEKFGAELRK 806 >ref|NP_980979.1| phenylalanyl-tRNA synthetase, beta subunit [Bacillus cereus ATCC 10987] gb|AAS43587.1| phenylalanyl-tRNA synthetase, beta subunit [Bacillus cereus ATCC 10987] Length = 806 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/816 (48%), Positives = 545/816 (66%), Gaps = 11/816 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL +Y+ ++ VTA ELAD+IT +GIE++GVE NKG+ G+VVG+V EKHP+A Sbjct: 1 MFVSYRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKL+ C++D G+ E +QI+CGA N+A G KVPVA VGA LPG +IKKAKLRG S GM+ Sbjct: 61 DKLSKCLIDIGEEEPVQIICGAANIAKGLKVPVAKVGAVLPGNFKIKKAKLRGEASHGMV 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLGLNDEILDFDLTPNRSDCLSMI 179 C+ +ELG++ KL+ KE +GI + P + E+G D L++L L+DE+L+ LTPNR+DCL+M+ Sbjct: 121 CALQELGIDGKLVSKEYADGIFIFPSDAEVGADALEILNLHDEVLELGLTPNRADCLNML 180 Query: 180 GAAYEVSAILGRDLKLPDPAADLVEAGGLASDSISVKIENEEYCRHYSVRYISGVKPAPS 239 G AYEV+AI GR++KLP A DL E +D ISV +E +E Y + + VK PS Sbjct: 181 GVAYEVAAIYGREVKLP--AIDLQETAEKTADYISVSVEAKEENPLYIAKMVKNVKIGPS 238 Query: 240 PLWIQNRLMAAGVRPINNIVDITNYVMLEYGQPLHAFDGDKVEGGVLGVRFAREGELLTT 299 P+W+Q RLMAAG+RPI+N+VDITNY+++EYGQPLHAFD DK+ + VR A+EGE + T Sbjct: 239 PMWMQTRLMAAGIRPISNVVDITNYILMEYGQPLHAFDYDKLGSKEIVVRLAKEGEKIET 298 Query: 300 LDGQERKLEPQMLVIADGAGKAVALAGVMGGLETEVTEATVNLVLESAKFDGGTVRKTSR 359 LD QER L+ LVI +G KA+A+AGVMGG ++EVT TVN+++ESA F G TVR+TS+ Sbjct: 299 LDDQERTLQSHHLVITNGT-KALAVAGVMGGADSEVTNETVNVLIESAYFAGQTVRRTSK 357 Query: 360 QLGLRSEASLRFEKEVDPNAVIPALNRAAALIARYAGGTVHTGIVQAGTAAAEEKVLTLS 419 LGLRSE+S RFEK +DP A+ AAAL+A+YAGG G+V+A +E+ ++++ Sbjct: 358 DLGLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSVT 417 Query: 420 LEKLNRYLGTDLSLLEVKTLLTRLHFKCGDADQGLVEVQVPTRRGDISYDVDLIEEVARL 479 +K+NR LGT++S E+ T+ T L F + +G V VP RR DI+ DL+EEV RL Sbjct: 418 ADKVNRVLGTNISASEMGTMFTNLKFPFTEV-EGTFHVNVPARRPDITISEDLVEEVGRL 476 Query: 480 YGYDNIPTTLIEGVTTPGALTSRQFQXXXXXXXXADGGFQEVMGYSFIQPEQSKLFPALA 539 YGYD+IP TL G T G LTS Q + G E + YS +++K + Sbjct: 477 YGYDHIPVTLPSGTMTRGKLTSAQTKRRKVRRFLEGAGLYEAITYSLTSTDKAKQYMVEP 536 Query: 540 DGLLPVKLAMPMSEERSVLRTSLIPQLLDIARYNTNRRQSDLALFEIGNVFFTDEEQLTR 599 + PV LA+PMSEERS LR SL+PQLL+ YN R+ +AL+E+G++F EE Sbjct: 537 NEKAPVALALPMSEERSQLRLSLVPQLLEAVSYNVARKNDSVALYEVGSIFLPTEE--GE 594 Query: 600 QPRELPVLGLLLSGSRASKQWNVEEQPVDFFDLKGALETVFNYLGLGDSVSYEGDAPENY 659 P+E L +++G W E++ VDFF +KG LE +F+ LG+ + ++Y E Sbjct: 595 LPKEEQHLAGVMTGLALHHAWQGEKKVVDFFVMKGVLEGLFDVLGVSNQITYAPAKREGM 654 Query: 660 HPGRSASIYLQGPEGRVKLGTLGQLHPELQRELDLEDTYVAELLLQPLYSAARTNLQYTE 719 HPGR+A I L G +G +GQLHPE +++LD+++T+V EL L ++ A Y+ Sbjct: 655 HPGRTADIVLDGE----VIGFIGQLHPEAEKQLDVKNTFVFELSLVKVFGADAEETYYSA 710 Query: 720 LQRFPGIERDIAVVVDSAVPAGHLLASIRENGGTLLQNVQVFDVYTGGKMESGKKSIAIS 779 + RFP + RD+AVVV AG + I E GG LL++V +FD+Y G KME GKKS+A S Sbjct: 711 IPRFPSMTRDMAVVVTKETKAGEMKQVIAEAGGELLKDVTLFDLYEGEKMEEGKKSLAFS 770 Query: 780 LLYRHTDHTLTDXXXXXXHDKVVSALQQTFGAELRK 815 + Y + TLTD H++V++A+++ FGAELRK Sbjct: 771 MNYFDPERTLTDEEVTEAHNRVLTAVEEKFGAELRK 806 >ref|NP_658588.1| tRNA_bind, Putative tRNA binding domain [Bacillus anthracis A2012] ref|NP_847006.1| phenylalanyl-tRNA synthetase, beta subunit [Bacillus anthracis str. Ames] sp|Q81L31|SYFB_BACAA Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) gb|AAP28492.1| phenylalanyl-tRNA synthetase, beta subunit [Bacillus anthracis str. Ames] Length = 806 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/816 (47%), Positives = 543/816 (66%), Gaps = 11/816 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL +Y+ ++ VTA ELAD+IT +GIE++GVE NKG+ G+VVG+V EKHP+A Sbjct: 1 MFVSYRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKL+ C++D G+ E +QI+CGA N+A G KVPVA VGA LPG +IKKAKLRG S GM+ Sbjct: 61 DKLSKCLIDIGEEEPVQIICGAANIAKGLKVPVAKVGAVLPGNFKIKKAKLRGEASHGMV 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLGLNDEILDFDLTPNRSDCLSMI 179 C+ +ELG++ KL+ KE +GI + P + E+G D L++L L+DE+L+ LTPNR+DCL+M+ Sbjct: 121 CALQELGIDGKLVSKEYADGIFIFPSDAEVGADALEILNLHDEVLELGLTPNRADCLNML 180 Query: 180 GAAYEVSAILGRDLKLPDPAADLVEAGGLASDSISVKIENEEYCRHYSVRYISGVKPAPS 239 G AYEV+AI GR++KLP A DL E SD ISV +E +E Y + + VK PS Sbjct: 181 GVAYEVAAIYGREVKLP--AIDLQETAEKTSDYISVSVEAKEENPLYIAKMVKNVKIGPS 238 Query: 240 PLWIQNRLMAAGVRPINNIVDITNYVMLEYGQPLHAFDGDKVEGGVLGVRFAREGELLTT 299 P+W+Q RLMAAG+RPI+N+VDITNY+++EYGQPLHAFD DK+ + VR A+EGE + T Sbjct: 239 PMWMQTRLMAAGIRPISNVVDITNYILMEYGQPLHAFDYDKLGSKEIVVRLAKEGEKIET 298 Query: 300 LDGQERKLEPQMLVIADGAGKAVALAGVMGGLETEVTEATVNLVLESAKFDGGTVRKTSR 359 LD QER L+ LVI +G KA+A+AGVMGG ++EVT TVN+++ESA F G TVR+TS+ Sbjct: 299 LDDQERTLQSHHLVITNGT-KALAVAGVMGGADSEVTNETVNVLIESAYFAGQTVRRTSK 357 Query: 360 QLGLRSEASLRFEKEVDPNAVIPALNRAAALIARYAGGTVHTGIVQAGTAAAEEKVLTLS 419 LGLRSE+S RFEK +DP A+ AAAL+A+YAGG G+V+A +E+ ++++ Sbjct: 358 DLGLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSVT 417 Query: 420 LEKLNRYLGTDLSLLEVKTLLTRLHFKCGDADQGLVEVQVPTRRGDISYDVDLIEEVARL 479 EK+NR LGT++S E+ T+ T L F + +G V VP RR DI+ DL+EEV RL Sbjct: 418 AEKVNRVLGTNISASEMGTMFTNLKFPFTEV-EGTFHVNVPARRPDITISEDLVEEVGRL 476 Query: 480 YGYDNIPTTLIEGVTTPGALTSRQFQXXXXXXXXADGGFQEVMGYSFIQPEQSKLFPALA 539 YGYD+IP TL G T G LT+ Q + G E + YS +++K + Sbjct: 477 YGYDHIPVTLPSGTMTRGKLTAAQTKRRKVRRFLEGAGLYEAITYSLTSADKAKQYMVEP 536 Query: 540 DGLLPVKLAMPMSEERSVLRTSLIPQLLDIARYNTNRRQSDLALFEIGNVFFTDEEQLTR 599 + PV LA+PMSEERS LR SL+PQLL+ YN R+ +AL+E+G++F E Sbjct: 537 NEKAPVNLALPMSEERSQLRLSLVPQLLEAVSYNVARKNDSVALYEVGSIFLPTE--AGE 594 Query: 600 QPRELPVLGLLLSGSRASKQWNVEEQPVDFFDLKGALETVFNYLGLGDSVSYEGDAPENY 659 P+E L +++G W E++ VDFF +KG LE +F+ LG+ + ++Y E Sbjct: 595 LPKEEQHLAGVMTGLALHHAWQGEKKVVDFFVVKGVLEGLFDVLGVSNQITYAPAKREGM 654 Query: 660 HPGRSASIYLQGPEGRVKLGTLGQLHPELQRELDLEDTYVAELLLQPLYSAARTNLQYTE 719 HPGR+A I L G +G +GQLHPE +++LD+++T+V EL L ++ Y+ Sbjct: 655 HPGRTADIVLDGE----VIGFIGQLHPEAEKQLDVKNTFVFELSLVKVFGTDAEETYYSA 710 Query: 720 LQRFPGIERDIAVVVDSAVPAGHLLASIRENGGTLLQNVQVFDVYTGGKMESGKKSIAIS 779 + RFP + RD+AVVV AG + I E GG LL++V +FD+Y G KME GKKS+A S Sbjct: 711 IPRFPSMTRDMAVVVTKETKAGEMKQVIAEAGGELLKDVTLFDLYEGEKMEEGKKSLAFS 770 Query: 780 LLYRHTDHTLTDXXXXXXHDKVVSALQQTFGAELRK 815 + Y + TLTD H++V++A+++ FGAELRK Sbjct: 771 MNYFDPERTLTDEEVTEAHNRVLTAVEEKFGAELRK 806 >ref|NP_243976.1| phenylalanyl-tRNA synthetase beta subunit [Bacillus halodurans] sp|Q9K896|SYFB_BACHD Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) pir||F84038 phenylalanyl-tRNA synthetase beta subunit pheT [imported] - Bacillus halodurans (strain C-125) dbj|BAB06829.1| phenylalanyl-tRNA synthetase beta subunit [Bacillus halodurans] Length = 808 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/815 (49%), Positives = 532/815 (65%), Gaps = 9/815 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL Y+ L+G++A E+A+++T GIE+D + N+G +G+VVG+V +HP+A Sbjct: 1 MLVSYQWLKQYVDLDGISAEEVAEKLTRGGIEVDIIHDLNQGATGVVVGHVLECRQHPNA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKLN+C V+ G+ E +QIVCGA NVAAGQKV VA VGA LPG +IKKAKLRG LSQGMI Sbjct: 61 DKLNLCQVEIGEEEPVQIVCGAPNVAAGQKVAVAKVGAVLPGNFKIKKAKLRGELSQGMI 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLGLNDEILDFDLTPNRSDCLSMI 179 CS +ELG+ +K + KE +GI V ++ EIG D L+ L D++L+ DLTPNRSDCL+M Sbjct: 121 CSLQELGVENKFVQKEFADGIYVFSDDVEIGSDALEALNRYDQVLELDLTPNRSDCLNMY 180 Query: 180 GAAYEVSAILGRDLKLPDPAADLVEAGGLASDSISVKIENEEYCRHYSVRYISGVKPAPS 239 G AYEV+A+ +++ P A+ G ASD +SV+IE+ E +Y I VK PS Sbjct: 181 GVAYEVAALFDKEVHWP--TAESSGTDGQASDYVSVEIEDIEKNPYYGATIIKNVKVGPS 238 Query: 240 PLWIQNRLMAAGVRPINNIVDITNYVMLEYGQPLHAFDGDKVEGGVLGVRFAREGELLTT 299 PLW+QNRL+AAG+RPI+N+VD+TNYV+LEYGQPLHAFD D++ + R A+EGE + T Sbjct: 239 PLWLQNRLIAAGIRPISNVVDVTNYVLLEYGQPLHAFDYDRLGSNKVVTRLAKEGEKMVT 298 Query: 300 LDGQERKLEPQMLVIADGAGKAVALAGVMGGLETEVTEATVNLVLESAKFDGGTVRKTSR 359 LD ER L+ L+I +G VA+AGVMGG +EV E T ++LE+A FD TVRK SR Sbjct: 299 LDDVERTLQADHLLITNGR-DPVAIAGVMGGATSEVQEDTTTVLLEAAYFDPATVRKASR 357 Query: 360 QLGLRSEASLRFEKEVDPNAVIPALNRAAALIARYAGGTVHTGIVQAGTAAAEEKVLTLS 419 LGLRS++S RFEK VDP V A RAA LIA AGGTV G+V+AG A EE V++L+ Sbjct: 358 DLGLRSDSSSRFEKGVDPKRVREAAARAATLIAEVAGGTVVGGVVEAGELAIEEPVVSLN 417 Query: 420 LEKLNRYLGTDLSLLEVKTLLTRLHFKCGDADQGLVEVQVPTRRGDISYDVDLIEEVARL 479 L +N+ LG +LS EV + RL F + EV P+RRGDI + DL EEVARL Sbjct: 418 LPHMNQRLGMELSHDEVAAIFDRLGFAY-TVENDTFEVTAPSRRGDIRIEEDLFEEVARL 476 Query: 480 YGYDNIPTTLIEGVTTPGALTSRQFQXXXXXXXXADGGFQEVMGYSFIQPEQSKLFPALA 539 YGYDNIPTT G TT G LT Q + G EVM YS E+ K Sbjct: 477 YGYDNIPTTFPVGGTTRGGLTDYQQKRRKIRRYLEGAGLFEVMTYSLTSEEKEKGLQGEN 536 Query: 540 DGLLPVKLAMPMSEERSVLRTSLIPQLLDIARYNTNRRQSDLALFEIGNVFFTDEEQLTR 599 + LP+++AMPMSEERS +RTSL+P LLD+ +YN NR+Q L ++E+G+VF + EE LT+ Sbjct: 537 EDYLPIRVAMPMSEERSTMRTSLVPHLLDVVQYNLNRKQEALFIYELGSVFLSKEETLTK 596 Query: 600 QPRELPVLGLLLSGSRASKQWNVEEQPVDFFDLKGALETVFNYLGLGDSVSYEGDAPENY 659 QP E +L L+G W E++ VDFF +KG LE +F LGL + V++E Sbjct: 597 QPEEREMLAGALTGFWTEHLWQGEKKAVDFFVVKGILEGMFAELGLSEKVTFERGEQPGM 656 Query: 660 HPGRSASIYLQGPEGRVKLGTLGQLHPELQRELDLEDTYVAELLLQPLYSAARTNLQYTE 719 HPGR+A++ + G +G GQ+HPE Q ELDL++TYV +L ++ L + T + Y Sbjct: 657 HPGRTANVKVNGR----AVGFAGQIHPERQSELDLKETYVFQLDVESLLTEEGTEVAYEP 712 Query: 720 LQRFPGIERDIAVVVDSAVPAGHLLASIRENGGTLLQNVQVFDVYTGGKMESGKKSIAIS 779 L RFP I RDIA+VVD V A L I NGG L++V +FD+Y G ME+GKKSIA S Sbjct: 713 LPRFPAISRDIALVVDENVTAAQLQQVIEANGGEWLKHVYLFDLYEGEHMEAGKKSIAFS 772 Query: 780 LLYRHTDHTLTDXXXXXXHDKVVSALQQTFGAELR 814 L Y + TLTD H++++ L+ + GA LR Sbjct: 773 LTYFDPERTLTDEEVTAVHEQILKELEASTGAVLR 807 >ref|NP_390741.1| phenylalanyl-tRNA synthetase (beta subunit) [Bacillus subtilis] sp|P17922|SYFB_BACSU Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) pir||YFBSB phenylalanine-tRNA ligase (EC 6.1.1.20) beta chain - Bacillus subtilis emb|CAA99564.1| phenylalanyl-tRNA synthetase beta subunit [Bacillus subtilis] emb|CAB14823.1| phenylalanyl-tRNA synthetase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 804 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/815 (48%), Positives = 526/815 (64%), Gaps = 13/815 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL DY+ L+G+ A LA++IT AGIE++G+E + +G+ G+V+G+V +E+HP+A Sbjct: 1 MFVSYKWLEDYVDLKGMDPAVLAEKITRAGIEVEGIEYKGEGIKGVVIGHVLEREQHPNA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKLN C+VD G +QI+CGA NV GQKV VA VGA LPG +IKKAKLRG S GMI Sbjct: 61 DKLNKCLVDIGAEAPVQIICGAPNVDKGQKVAVATVGAVLPGNFKIKKAKLRGEESNGMI 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLGLNDEILDFDLTPNRSDCLSMI 179 CS +ELG+ KL+ KE EGI V P + E G D L L L+D IL+ LTPNR+D ++M+ Sbjct: 121 CSLQELGIESKLVAKEYAEGIFVFPNDAETGSDALAALQLDDAILELGLTPNRADAMNML 180 Query: 180 GAAYEVSAILGRDLKLPDPAADLVEAGGLASDSISVKIENEEYCRHYSVRYISGVKPAPS 239 G AYEV+AIL ++KLP D A ASD ISVKIE++E Y+ + I V APS Sbjct: 181 GVAYEVAAILDTEVKLPQ--TDYPAASEQASDYISVKIEDQEANPLYTAKIIKNVTIAPS 238 Query: 240 PLWIQNRLMAAGVRPINNIVDITNYVMLEYGQPLHAFDGDKVEGGVLGVRFAREGELLTT 299 PLW+Q +LM AG+RP NN+VDITN+V+LEYGQPLHAFD D+ + VR A E E++ T Sbjct: 239 PLWMQTKLMNAGIRPHNNVVDITNFVLLEYGQPLHAFDYDRFGSKEVVVRKAAENEMIVT 298 Query: 300 LDGQERKLEPQMLVIADGAGKAVALAGVMGGLETEVTEATVNLVLESAKFDGGTVRKTSR 359 LD QERKL LVI +G KA A+AGVMGG E+EV E T ++LE+A F+G VRK S+ Sbjct: 299 LDDQERKLSADHLVITNGT-KAQAVAGVMGGAESEVQEDTKTILLEAAYFNGQKVRKASK 357 Query: 360 QLGLRSEASLRFEKEVDPNAVIPALNRAAALIARYAGGTVHTGIVQAGTAAAEEKVLTLS 419 LGLRSE+S+RFEK +DP V A RAA LI YAGG V G V+ E + +S Sbjct: 358 DLGLRSESSVRFEKGIDPARVRLAAERAAQLIHLYAGGEVLAGTVEEDHLTIEANNIHVS 417 Query: 420 LEKLNRYLGTDLSLLEVKTLLTRLHFKCGDADQGLVEVQVPTRRGDISYDVDLIEEVARL 479 +K++ LG +S E+ ++ RL F G+AD LV V VP+RRGDI+ + DLIEE ARL Sbjct: 418 ADKVSSVLGLTISKEELISIYKRLGFTVGEADDLLV-VTVPSRRGDITIEEDLIEEAARL 476 Query: 480 YGYDNIPTTLIEGVTTPGALTSRQFQXXXXXXXXADGGFQEVMGYSFIQPEQSKLFPALA 539 YGYDNIP+TL E T G LT Q + G + + YS +++ F A+ Sbjct: 477 YGYDNIPSTLPETAGTTGGLTPYQAKRRKVRRFLEGAGLSQAITYSLTNEKKATAF-AIE 535 Query: 540 DGLLPVKLAMPMSEERSVLRTSLIPQLLDIARYNTNRRQSDLALFEIGNVFFTDEEQLTR 599 L V LA+PMSEERS+LR SL+P LLD YN R+ +AL+E+G+VF T EE Sbjct: 536 KSLNTV-LALPMSEERSILRHSLVPNLLDSVSYNLARQTDSVALYEVGSVFLTKEED--T 592 Query: 600 QPRELPVLGLLLSGSRASKQWNVEEQPVDFFDLKGALETVFNYLGLGDSVSYEGDAPENY 659 +P E + ++G + W E++PVDFF +KG +E + + L + DS+ + + Sbjct: 593 KPVETERVAGAVTGLWRKQLWQGEKKPVDFFVVKGIVEGLLDKLNVLDSIEFVQSERKQL 652 Query: 660 HPGRSASIYLQGPEGRVKLGTLGQLHPELQRELDLEDTYVAELLLQPLYSAARTNLQYTE 719 HPGR+A+I L G +G +GQ+HP L++ELD+++TYV EL L L +A L YT Sbjct: 653 HPGRTANILLNGS----LIGFIGQVHPSLEKELDIKETYVFELDLHALLAAETAPLVYTA 708 Query: 720 LQRFPGIERDIAVVVDSAVPAGHLLASIRENGGTLLQNVQVFDVYTGGKMESGKKSIAIS 779 + ++P + RDIA+V D V +G L + I+E GG LL+ V VFDVY G ME GKKS+A S Sbjct: 709 IPKYPSVTRDIALVTDKTVTSGQLESVIKEAGGKLLKEVTVFDVYEGEHMEEGKKSVAFS 768 Query: 780 LLYRHTDHTLTDXXXXXXHDKVVSALQQTFGAELR 814 L Y + + TLT+ H KV+ AL+ T+ A LR Sbjct: 769 LQYVNPEQTLTEEEVTKAHSKVLKALEDTYQAVLR 803 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,168,822,518 Number of extensions: 49930498 Number of successful extensions: 125375 Number of sequences better than 1.0e-05: 1332 Number of HSP's gapped: 120817 Number of HSP's successfully gapped: 1352 Length of query: 815 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 681 Effective length of database: 393,414,312 Effective search space: 267915146472 Effective search space used: 267915146472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)