BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0094.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00151880.1| hypothetical protein Daro003401 [Dechloromona... 135 1e-30 ref|NP_220622.1| unknown [Rickettsia prowazekii] >gi|7467922|pir... 129 1e-28 ref|NP_213011.1| hypothetical protein [Aquifex aeolicus] >gi|751... 127 4e-28 ref|NP_359958.1| regulatory components of sensory transduction s... 127 6e-28 ref|ZP_00142216.1| regulatory components of sensory transduction... 125 1e-27 >ref|ZP_00151880.1| hypothetical protein Daro003401 [Dechloromonas aromatica RCB] Length = 449 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 109/193 (56%), Gaps = 2/193 (1%) Query: 160 IIRAREVREHLEQLTKSEQELMVERAISDKLLKIDALTGLYNHKTFHEYLVSLLEQCESN 219 +I A E + + + ++E+ L L + D+LTGL+N + HE L + LE+ Sbjct: 253 VIGAIETLQDVTERRRAEEALRESEERYRSLSQTDSLTGLFNSRHLHEQLPNELERAGRY 312 Query: 220 GLRLQLALFDIDNFKRVNDTYGHWVGDLVLKEVAAKVGGLIGLNDFAARYGGEEFAVIFT 279 G L L + D DNFK VND YGH GD VL+ +A +G + +DFA RYGGEEF V+ Sbjct: 313 GRPLSLLVLDCDNFKCVNDRYGHLGGDKVLQSLATAIGHCLRRSDFAFRYGGEEFVVLLP 372 Query: 280 DKSIHEAYAAAEELRLKIAAMEHPYAGGKPI--TVSIGLCDYQLGDGKEKLFRKTDHALY 337 + +I A A AE LR + A++E P G I TVSIG+ + G+ + L R+ D A Y Sbjct: 373 ETAIQAALAIAERLRSQFASIETPAPSGDAICCTVSIGVAECVPGESEASLVRRADEACY 432 Query: 338 AAKHSGKNAVVTA 350 AK GKN VV A Sbjct: 433 MAKARGKNCVVMA 445 >ref|NP_220622.1| unknown [Rickettsia prowazekii] pir||A71678 probable response regulatory protein RP237 - Rickettsia prowazekii emb|CAA14699.1| unknown [Rickettsia prowazekii] Length = 450 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 194 DALTGLYNHKTFHEYLVSLLEQCESNGLRLQLALFDIDNFKRVNDTYGHWVGDLVLKEVA 253 D LTGL+N + F +L ++E+ ++L L + DIDNFK VNDTYGH GD VL V+ Sbjct: 291 DGLTGLFNRRYFDIHLKQMIEKANKENIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTTVS 350 Query: 254 AKVGGLIGLNDFAARYGGEEFAVIFTDKSIHEAYAAAEELRLKIAAMEHPYAGG-KPI-- 310 + + + D AR+GGEEF ++ TD I +A AE +R+KI M+ G +P+ Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMDFYIEGQIEPLKK 410 Query: 311 TVSIGLCDYQLGDGKEKLFRKTDHALYAAKHSGKNAVV 348 T+SIG+ +Y+ + E ++ D A+Y AK +GKN VV Sbjct: 411 TISIGVTEYKKEESIESFIKRADKAMYEAKTTGKNKVV 448 >ref|NP_213011.1| hypothetical protein [Aquifex aeolicus] pir||H70302 conserved hypothetical protein aq_035 - Aquifex aeolicus gb|AAC06416.1| hypothetical protein [Aquifex aeolicus VF5] Length = 431 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 2/180 (1%) Query: 170 LEQLTKSEQELMVERAISDKLLKIDALTGLYNHKTFHEYLVSLLEQCESNGLRLQLALFD 229 +E L K E E+ + +++ D LTGLYN + F E L + + G + + D Sbjct: 243 IETLKKILIETSKEKTLYERMALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMID 302 Query: 230 IDNFKRVNDTYGHWVGDLVLKEVAAKVGGLIGLNDFAARYGGEEFAVIFTDKSIHEAYAA 289 IDNFK++NDTYGH VGDLVLK+++ + + D AR+GGEEF V+ ++ +++ A Sbjct: 303 IDNFKKINDTYGHDVGDLVLKKISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKK 362 Query: 290 AEELRLKI--AAMEHPYAGGKPITVSIGLCDYQLGDGKEKLFRKTDHALYAAKHSGKNAV 347 AE+LR I +E P +TVSIG+ Y+ + E+L ++ D ALY AK GKN V Sbjct: 363 AEQLRRMIEQTPIELPNGEKLRVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRV 422 >ref|NP_359958.1| regulatory components of sensory transduction system [Rickettsia conorii] pir||A97740 hypothetical protein RC0321 [imported] - Rickettsia conorii (strain Malish 7) gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia conorii] Length = 450 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 9/191 (4%) Query: 161 IRAREVREHLEQLTKSEQELMVERAISDKLLKIDALTGLYNHKTFHEYLVSLLEQCESNG 220 IR + R+ + +++ E V A+ D LTGL+N + F +L ++E+ Sbjct: 264 IRTQLRRKQYQDNLRNDLEQSVNLAVKD------GLTGLFNRRYFDIHLKQIIEKTNKES 317 Query: 221 LRLQLALFDIDNFKRVNDTYGHWVGDLVLKEVAAKVGGLIGLNDFAARYGGEEFAVIFTD 280 ++L L + DIDNFK VNDTYGH GD VL V+ + + + D AR+GGEEF ++ TD Sbjct: 318 IKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVSRILKNTLRVTDLIARFGGEEFTILLTD 377 Query: 281 KSIHEAYAAAEELRLKIAAME-HPYAGGKPI--TVSIGLCDYQLGDGKEKLFRKTDHALY 337 I +A A AE +R+KI M H +P+ T+SIG+ Y+ + E + D A+Y Sbjct: 378 IDISKAIATAERIRVKIEYMNFHIEDQIEPLKTTISIGVTKYKKEESIESFIERADKAMY 437 Query: 338 AAKHSGKNAVV 348 AK +GKN VV Sbjct: 438 EAKTTGKNKVV 448 >ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia sibirica] gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia sibirica] Length = 450 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 194 DALTGLYNHKTFHEYLVSLLEQCESNGLRLQLALFDIDNFKRVNDTYGHWVGDLVLKEVA 253 D LTGL+N + F +L ++E+ ++L L + DIDNFK VNDTYGH GD VL V+ Sbjct: 291 DGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGHQAGDKVLTIVS 350 Query: 254 AKVGGLIGLNDFAARYGGEEFAVIFTDKSIHEAYAAAEELRLKIAAME-HPYAGGKPI-- 310 + + + D AR+GGEEF ++ TD I +A AE +R+KI M H +P+ Sbjct: 351 RILKNTLRVTDLIARFGGEEFTILLTDIDISKAIETAERVRVKIEYMNFHIEDQIEPLKT 410 Query: 311 TVSIGLCDYQLGDGKEKLFRKTDHALYAAKHSGKNAVV 348 T+SIG+ Y+ + E + D A+Y AK +GKN VV Sbjct: 411 TISIGVTKYKKAESIESFIERADKAMYEAKTTGKNKVV 448 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 483,815,130 Number of extensions: 18505415 Number of successful extensions: 64375 Number of sequences better than 1.0e-05: 2079 Number of HSP's gapped: 62573 Number of HSP's successfully gapped: 2080 Length of query: 363 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 236 Effective length of database: 412,420,005 Effective search space: 97331121180 Effective search space used: 97331121180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)