BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0092.p (788 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243972.1| DNA mismatch repair protein [Bacillus haloduran... 723 0.0 ref|NP_390736.1| similar to DNA mismatch repair protein [Bacillu... 688 0.0 ref|NP_980971.1| MutS2 family protein [Bacillus cereus ATCC 1098... 669 0.0 ref|NP_658580.1| MUTSac, ATPase domain of DNA mismatch repair MU... 665 0.0 ref|NP_693045.1| DNA mismatch repair protein [Oceanobacillus ihe... 632 e-180 >ref|NP_243972.1| DNA mismatch repair protein [Bacillus halodurans] sp|Q9K8A0|MUS2_BACHD MutS2 protein pir||B84038 DNA mismatch repair protein BH3106 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06825.1| DNA mismatch repair protein [Bacillus halodurans] Length = 785 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/789 (47%), Positives = 522/789 (66%), Gaps = 8/789 (1%) Query: 3 DKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLKGI 62 +++L LEY K+ +L ++ + +GR + E L PS DF VK T E AN+ RLKG Sbjct: 2 ERVLRVLEYEKMKKQLLEHVSSSLGRKKVEQLTPSTDFNKVKLWQAQTQEGANMLRLKGH 61 Query: 63 PSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDE--NIPLLFA 120 GG+ DIK LKRA IGGLL SELL V +TI G R++K+F+ M E+E ++PLL Sbjct: 62 VPLGGIFDIKPHLKRAKIGGLLHASELLEVASTIYGGRQLKKFIETMIEEEEADLPLLGE 121 Query: 121 QSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSV 180 + + +E AI+ CID+N VLD+ASP L +R ++R E +R KL+ + RSS+ Sbjct: 122 FARQIVPLTDLERAIKQCIDDNGHVLDSASPTLRTLRHQIRSFEANVRSKLEGITRSSNT 181 Query: 181 AKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXX 240 AKML D +VTIR DR+VIPVK EYR FGGIVHDQS SGATLF+EP+++V +NN+ Sbjct: 182 AKMLSDAIVTIRNDRYVIPVKQEYRGAFGGIVHDQSASGATLFVEPQAVVEINNQLREAK 241 Query: 241 XXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGY 300 V + +++ +VD+L ELDFI A+A + ++ATQP +N+RGY Sbjct: 242 AKEQREIERILSELSMQVSEHVDDLFVNVDVLAELDFIMARAHYGKAIRATQPILNNRGY 301 Query: 301 LKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFI 360 L +++GRHPLIP +++VP+D+ELG+ YSS+++TGPNTGGKTVTLKTI + Sbjct: 302 LLIKQGRHPLIPDDEIVPIDIELGHSYSSLVITGPNTGGKTVTLKTIGLLTLMAQSGLHV 361 Query: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGT 420 PAEE S++ VF ++ADIGDEQSIEQSLSTF SHMTNI+ IL ++ +SL+L DE+GAGT Sbjct: 362 PAEEESELAVFKHVFADIGDEQSIEQSLSTFSSHMTNIVDILGKVDHESLVLFDELGAGT 421 Query: 421 DPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRL 480 DP EG+ALAIAIL++++R R+VATTHYSELK YAY R+GV+NAS+EFDV+TLSPTYRL Sbjct: 422 DPTEGAALAIAILDDVYRRGARIVATTHYSELKGYAYNREGVMNASVEFDVETLSPTYRL 481 Query: 481 LVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXX 540 L+GVPGRSNAFAI++RLGL +I+E A+ + E+ +VE MIASL Sbjct: 482 LIGVPGRSNAFAISKRLGLEEKIIEQAKAHIDEDASQVESMIASLEQSQKSAESDWEEAE 541 Query: 541 XXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEE 600 Q +L+ LE ++++ L +AE+ A + A++EAE IIS+LR L ++ Sbjct: 542 KALQEAEQLRLDLQKKLDDLEKEKERILAEAEQQAEQAVKDAKEEAEVIISELRDLQ-KQ 600 Query: 601 GASVKEHKLIEARRRLDEAEPA-PRKKTAARSSVKAPRKIQPGDEVKVQNVNQKGYVVEL 659 G SVKEH++I+A++ L+EA P +++ + + + R+ +PGDEVKV + QKG++VE Sbjct: 601 GVSVKEHQIIDAKKHLEEAAPKLTKQQKKVKRTAEKKREFKPGDEVKVLSFGQKGHIVEK 660 Query: 660 SGPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGTN 719 E VQ GIMKMKV DL+ R D +++ ELDLRG Sbjct: 661 VSEAEYQVQMGIMKMKVEASDLQLIDRPQPVETKPLATI----RGSDHHVKPELDLRGER 716 Query: 720 LEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGG 779 EEA+++ ++++D+A L +SIIHGKGTG LR G+++ L++H HVKS R G NEGG Sbjct: 717 YEEAMLKVEKYLDDALLAGYASVSIIHGKGTGALRKGVKDLLKRHPHVKSARDGGANEGG 776 Query: 780 AGVTVAELQ 788 G TV EL+ Sbjct: 777 LGNTVVELR 785 >ref|NP_390736.1| similar to DNA mismatch repair protein [Bacillus subtilis] sp|P94545|MUS2_BACSU MutS2 protein pir||D69985 DNA mismatch repair protein homolog yshD - Bacillus subtilis emb|CAA99569.1| hypothetical protein [Bacillus subtilis] emb|CAB14818.1| mutSB [Bacillus subtilis subsp. subtilis str. 168] Length = 785 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/789 (46%), Positives = 505/789 (64%), Gaps = 5/789 (0%) Query: 1 LDDKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLK 60 + K+L LE+ K+ ++ + + +G+ LKPS + +KK L DEA+++ RL+ Sbjct: 1 MQQKVLSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEIKKQLDEVDEASDIIRLR 60 Query: 61 GIPSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDE-NIPLLF 119 G FGG+ DI+ AL+RA IG +L SE + + +++K F+ M ED +IPL+ Sbjct: 61 GQAPFGGLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDIPLIH 120 Query: 120 AQSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSS 179 ++ L +E I +CID++ +VLD AS L IR +LR E+R+R++L+SM+RSSS Sbjct: 121 QHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLESMLRSSS 180 Query: 180 VAKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXX 239 +KML D +VTIR DRFVIPVK EYR+ +GGIVHD S SGATLFIEP++IV MNN Sbjct: 181 ASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA 240 Query: 240 XXXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRG 299 + EE+ D+ +L LDFIFAKAR A+ +KAT+P MND G Sbjct: 241 KVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKATKPIMNDTG 300 Query: 300 YLKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXF 359 +++L+K RHPL+P +QVV D+ELG +S+I++TGPNTGGKTVTLKT+ Sbjct: 301 FIRLKKARHPLLPPDQVVANDIELGRDFSTIVITGPNTGGKTVTLKTLGLLTLMAQSGLH 360 Query: 360 IPAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAG 419 IPA+EGS+ VF+ ++ADIGDEQSIEQSLSTF SHM NI+ IL ++ SL+L DE+GAG Sbjct: 361 IPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNIVGILEQVNENSLVLFDELGAG 420 Query: 420 TDPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYR 479 TDP EG+ALA++IL+++HRT R++ATTHY ELKAY Y R+GV+NAS+EFD++TLSPTY+ Sbjct: 421 TDPQEGAALAMSILDDVHRTNARVLATTHYPELKAYGYNREGVMNASVEFDIETLSPTYK 480 Query: 480 LLVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXX 539 LL+GVPGRSNAF I++RLGLP+ I+ A+ E+ E V+ MIASL Sbjct: 481 LLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNEVDTMIASLEQSKKRAEEELSET 540 Query: 540 XXXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALE 599 Q ++ +L S++DK LE+AE+ A+ + A KEAE II +LR + E Sbjct: 541 ESIRKEAEKLHKELQQQIIELNSKKDKMLEEAEQQAAEKVKAAMKEAEDIIHELRTIK-E 599 Query: 600 EGASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPRKIQPGDEVKVQNVNQKGYVVEL 659 E S K+H+LI A++RL+ A PA K R +PGDEVKV QKG ++E Sbjct: 600 EHKSFKDHELINAKKRLEGAMPAFEKSKKPEKPKTQKRDFKPGDEVKVLTFGQKGTLLEK 659 Query: 660 SGPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGTN 719 +G E VQ GI+KMKV +DLEF T + +D ++ ELDLRG Sbjct: 660 TGGNEWNVQIGILKMKVKEKDLEF---IKSAPEPKKEKMITAVKGKDYHVSLELDLRGER 716 Query: 720 LEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGG 779 E A+ ++++D+A L ++SIIHGKGTG LR G+Q+ L+ H+ VKS R G EGG Sbjct: 717 YENALSRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGG 776 Query: 780 AGVTVAELQ 788 +GVTV EL+ Sbjct: 777 SGVTVVELK 785 >ref|NP_980971.1| MutS2 family protein [Bacillus cereus ATCC 10987] gb|AAS43579.1| MutS2 family protein [Bacillus cereus ATCC 10987] Length = 786 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/788 (45%), Positives = 500/788 (63%), Gaps = 6/788 (0%) Query: 3 DKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLKGI 62 ++ L LEY K+ +L ++T + +GR + + L PS DFE + ++ TDEAA V RLKG Sbjct: 3 ERTLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTDFEEIVEMQDTTDEAAKVIRLKGS 62 Query: 63 PSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDE-NIPLLFAQ 121 GG+TDI+ +KRA IG +L +ELL + NT+ G+R +KRF+ M ++ ++P+L Sbjct: 63 APLGGITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVDLPILETH 122 Query: 122 SDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSVA 181 + +E I CI + +V+D+AS +L IR ++R E+RIREKL++M RSS+ Sbjct: 123 VAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLENMTRSSNAQ 182 Query: 182 KMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXXX 241 KML D +VTIR +R+VIPVK EYR +GGIVHDQS SG TLFIEP+ IV +NN Sbjct: 183 KMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELNNALQEARV 242 Query: 242 XXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGYL 301 V A+ + +V+++ LDFIFAKA A+ +KAT+P +N+ Y+ Sbjct: 243 KEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKPIVNNERYM 302 Query: 302 KLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFIP 361 LR+ RHPLI E +VP ++ LG +++I++TGPNTGGKTVTLKT+ IP Sbjct: 303 DLRQARHPLIDPEVIVPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIP 362 Query: 362 AEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGTD 421 + S++CVF I+ADIGDEQSIEQSLSTF SHM NI+ IL + +SL+L DE+GAGTD Sbjct: 363 VMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTD 422 Query: 422 PAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRLL 481 P EG+ALAI+IL+ + R+VATTHY ELKAY Y R+ VINAS+EFDV TLSPTY+LL Sbjct: 423 PQEGAALAISILDEVCNRGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLL 482 Query: 482 VGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXXX 541 +GVPGRSNAF I++RLGL + ++E AR + + ++E+MIA L Sbjct: 483 IGVPGRSNAFEISKRLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEA 542 Query: 542 XXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEEG 601 Q ++ + +RD+RL KA+K+ ++ A+KEAE II +LR+L + Sbjct: 543 LRKQSEKLHRELQRQIIEFNEERDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQL 602 Query: 602 ASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPR-KIQPGDEVKVQNVNQKGYVVELS 660 A+VK+H+LIEA+ RL+ A P KK AP+ +++ GDEVKV QKG ++E Sbjct: 603 ANVKDHELIEAKSRLEGAAPELVKKQKVNVKNTAPKQQLRAGDEVKVLTFGQKGQLLEKV 662 Query: 661 GPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGTNL 720 E VQ GI+KMKV D+E+ TVK RD ++ ELDLRG Sbjct: 663 SDTEWSVQIGILKMKVKESDMEY---INTPKQTEKKAVATVK-GRDYHVSLELDLRGERF 718 Query: 721 EEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGGA 780 E A+ ++++D+A L + ++SIIHGKGTG LR G+Q+YL+KH+ VK++R G+ EGG Sbjct: 719 ENAMARVEKYLDDAQLASYPRVSIIHGKGTGALRQGVQDYLKKHRGVKTFRYGDMGEGGL 778 Query: 781 GVTVAELQ 788 GVTV EL+ Sbjct: 779 GVTVVELK 786 >ref|NP_658580.1| MUTSac, ATPase domain of DNA mismatch repair MUTS family [Bacillus anthracis A2012] ref|NP_846997.1| MutS2 family protein [Bacillus anthracis str. Ames] gb|AAP28483.1| MutS2 family protein [Bacillus anthracis str. Ames] Length = 786 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/788 (45%), Positives = 499/788 (63%), Gaps = 6/788 (0%) Query: 3 DKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLKGI 62 ++ L LEY K+ +L ++T + +GR + + L PS DFE + ++ TDEAA V RLKG Sbjct: 3 ERTLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTDFEEIVEMQDTTDEAAKVIRLKGS 62 Query: 63 PSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDE-NIPLLFAQ 121 GG+TDI+ +KRA IG +L +ELL + NT+ G+R +KRF+ M ++ +P+L Sbjct: 63 APLGGITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPILETH 122 Query: 122 SDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSVA 181 + +E I CI + +V+D+AS +L IR ++R E+RIREKL++M RSS+ Sbjct: 123 VAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLENMTRSSNAQ 182 Query: 182 KMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXXX 241 KML D +VTIR +R+VIPVK EYR +GGIVHDQS SG TLFIEP+ IV +NN Sbjct: 183 KMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELNNALQEARV 242 Query: 242 XXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGYL 301 V A+ + +V+++ LDFIFAKA A+ +KAT+P +N+ Y+ Sbjct: 243 KEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKPIVNNERYM 302 Query: 302 KLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFIP 361 LR+ RHPLI E +VP ++ LG +++I++TGPNTGGKTVTLKT+ IP Sbjct: 303 DLRQARHPLIDPEVIVPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIP 362 Query: 362 AEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGTD 421 + S++CVF I+ADIGDEQSIEQSLSTF SHM NI+ IL + +SL+L DE+GAGTD Sbjct: 363 VMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTD 422 Query: 422 PAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRLL 481 P EG+ALAI+IL+ + R+VATTHY ELKAY Y R+ VINAS+EFDV TLSPT++LL Sbjct: 423 PQEGAALAISILDEVCNRGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLL 482 Query: 482 VGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXXX 541 +GVPGRSNAF I++RLGL N +++ AR + + ++E+MIA L Sbjct: 483 IGVPGRSNAFEISKRLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEA 542 Query: 542 XXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEEG 601 Q ++ + +RD+RL KA+K+ ++ A+KEAE II +LR+L + Sbjct: 543 LRKQSEKLHRELQRQIIEFNEERDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQL 602 Query: 602 ASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAPR-KIQPGDEVKVQNVNQKGYVVELS 660 A+VK+H+LIEA+ RL+ A P KK AP+ +++ GDEVKV QKG ++E Sbjct: 603 ANVKDHELIEAKSRLEGAAPELVKKQKVNVKNTAPKQQLRAGDEVKVLTFGQKGQLLEKV 662 Query: 661 GPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRGTNL 720 E VQ GI+KMKV ++E+ TVK RD ++ ELDLRG Sbjct: 663 SDTEWSVQIGILKMKVKESNMEY---INTPKQTEKKAVATVK-GRDYHVSLELDLRGERF 718 Query: 721 EEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNEGGA 780 E A+ ++++D+A L + ++SIIHGKGTG LR G+Q+YL+KH+ VK++R G+ EGG Sbjct: 719 ENAMARVEKYLDDAQLASYPRVSIIHGKGTGALRQGVQDYLKKHRGVKTFRYGDMGEGGL 778 Query: 781 GVTVAELQ 788 GVTV EL+ Sbjct: 779 GVTVVELK 786 >ref|NP_693045.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831] dbj|BAC14080.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831] Length = 782 Score = 632 bits (1631), Expect = e-180, Method: Compositional matrix adjust. Identities = 341/790 (43%), Positives = 505/790 (63%), Gaps = 12/790 (1%) Query: 1 LDDKILHTLEYRKILNKLTQYTQTPMGRLEAESLKPSGDFEGVKKLLQATDEAANVDRLK 60 +++++L L+++ + L +T +G+ A+ KP + + L TDEAA + RL Sbjct: 1 MNERVLRVLDFKSVTEMLKGQAETALGKERAKITKPLSSLDKINMLQDETDEAAKIIRLN 60 Query: 61 GIPSFGGVTDIKMALKRASIGGLLGTSELLSVGNTIGGARRVKRFLAAMHEDENIPLLFA 120 GG+TDI+ ++KR+SIGG+L T E L V NT+ G+R VK + M E+ +IP+L Sbjct: 61 QAIPLGGITDIRASVKRSSIGGILSTDECLDVANTLYGSRNVKNTIENM-EELDIPILKE 119 Query: 121 QSDLLSEQKHVEDAIRACIDENADVLDTASPELAAIRRELRGGETRIREKLDSMIRSSSV 180 + ++ + +E AI++CID++ ++D AS +L +IR +R E+RIREKL++ RS+S Sbjct: 120 LVEHITPIRELEQAIKSCIDDHGHIMDGASSQLRSIRSSIRTLESRIREKLENYTRSNS- 178 Query: 181 AKMLQDQLVTIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNKXXXXX 240 KML D ++TIR DR+V+PVK EYR GGIVHDQS SG TLF+EP+++V +NN Sbjct: 179 -KMLSDAIITIRNDRYVLPVKQEYRGAIGGIVHDQSASGQTLFMEPKAVVDINNSLHESK 237 Query: 241 XXXXXXXXXXXXXXXALVGDIAEEMAYDVDILGELDFIFAKARLARDMKATQPRMNDRGY 300 V +++ +V +L +DFI+A+ +LA+ MKA++P+MND GY Sbjct: 238 SKEQLEIERILKDLSNQVASYEQDLLENVKVLTNIDFIYARGKLAQAMKASRPKMNDEGY 297 Query: 301 LKLRKGRHPLIPAEQVVPLDVELGNQYSSIIVTGPNTGGKTVTLKTIXXXXXXXXXXXFI 360 +K+++ RHP+IP ++VV D+E G +Y+SI++TGPNTGGKTVTLK + + Sbjct: 298 MKMQQARHPMIPIDEVVANDIEFGREYTSIVITGPNTGGKTVTLKLVGLCTLMAQSGLQV 357 Query: 361 PAEEGSQMCVFDAIYADIGDEQSIEQSLSTFPSHMTNIISILRRMTPKSLILLDEVGAGT 420 PA +G +M VFD ++ADIGDEQSIEQ+LSTF SHMTNI+ I++++T +SL+L DE+G+GT Sbjct: 358 PALDGCEMPVFDEVFADIGDEQSIEQNLSTFSSHMTNIVDIMKKITDRSLVLFDELGSGT 417 Query: 421 DPAEGSALAIAILENIHRTECRMVATTHYSELKAYAYERKGVINASMEFDVQTLSPTYRL 480 DP EG+ALA+AIL+ + + R++ATTHY ELKAY Y R+ V+NAS+EF+V+TL PTYRL Sbjct: 418 DPQEGAALAMAILDEVISKQARVIATTHYPELKAYGYNREQVVNASVEFNVETLKPTYRL 477 Query: 481 LVGVPGRSNAFAIAERLGLPNEILEHARGEVKEEDLRVEHMIASLXXXXXXXXXXXXXXX 540 L+GVPGRSNAF I+ RLGL +E A+ + + VE+MIASL Sbjct: 478 LIGVPGRSNAFDISTRLGLERATIERAKSLIGVDSKSVENMIASLEKSHLEAEQDYEQAH 537 Query: 541 XXXXXXXXXXXXQQLELEKLESQRDKRLEKAEKDASAILDKARKEAEQIISDLRRLALEE 600 + E E +++K +KAE+ A + KAR+EAE I+S++R+ +++ Sbjct: 538 DVLLESEKLRNALEHEWNLFEQKKEKLYKKAEEKAEKAIQKAREEAETIVSEMRQ--MKD 595 Query: 601 GASVKEHKLIEARRRLDEAEPAPRKKTAARSSVKAP---RKIQPGDEVKVQNVNQKGYVV 657 A +KEH+ IEAR+ LDEA+P K + P R++QPGDE+K+ VNQ G V+ Sbjct: 596 SAGLKEHEWIEARKMLDEAKPNLTKNGNQKQVDPKPVEDRQLQPGDEIKLLTVNQMGEVL 655 Query: 658 ELSGPKEAIVQFGIMKMKVNLEDLEFXXXXXXXXXXXXXXXTTVKRTRDENIRSELDLRG 717 E KE +VQ GIMK+KV +DLE TT+K + + ++ +ELDLRG Sbjct: 656 ERVSDKEYLVQVGIMKVKVKRKDLEL---IRKPKKKQVDPVTTIKGS-NYHVSTELDLRG 711 Query: 718 TNLEEAIMETDRFIDEAFLGNLGQISIIHGKGTGVLRTGIQEYLRKHKHVKSYRLGNYNE 777 E+AI+ ++++D+ L + SIIHGKGTG LR G+QE++ +H +K R G E Sbjct: 712 ERYEDAILRLEKYVDDVLLAGYPKASIIHGKGTGALRKGVQEFVGRHPRIKGARPGESGE 771 Query: 778 GGAGVTVAEL 787 GG+GVTV +L Sbjct: 772 GGSGVTVIQL 781 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 977,229,474 Number of extensions: 37270459 Number of successful extensions: 130199 Number of sequences better than 1.0e-05: 695 Number of HSP's gapped: 128795 Number of HSP's successfully gapped: 709 Length of query: 788 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 654 Effective length of database: 393,414,312 Effective search space: 257292960048 Effective search space used: 257292960048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)