BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0081.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244217.1| transcriptional regulator (Lrp/AsnC family) [Ba... 173 1e-42 ref|ZP_00061525.1| COG1522: Transcriptional regulators [Clostrid... 161 4e-39 ref|NP_847320.1| transcriptional regulator, AsnC family [Bacillu... 157 9e-38 ref|NP_981334.1| transcriptional regulator, AsnC family [Bacillu... 157 1e-37 ref|NP_653368.1| ASNC_trans_reg, AsnC family [Bacillus anthracis... 157 1e-37 >ref|NP_244217.1| transcriptional regulator (Lrp/AsnC family) [Bacillus halodurans] pir||G84068 transcription regulator (Lrp/AsnC family) BH3351 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07070.1| transcriptional regulator (Lrp/AsnC family) [Bacillus halodurans] Length = 164 Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 79/150 (52%), Positives = 116/150 (77%), Gaps = 1/150 (0%) Query: 18 DARSSTALMATLLGAEEEDVKQAIEEMERDHVIVKYATVVNWDKVSD-ERVTALIEVQIT 76 + R +A ++ A EE+V I+++E DHVI+ Y+ V++W KV + E VTA+I+V++T Sbjct: 15 NGRVPIPTLAKMIDATEEEVTAIIKKLENDHVILSYSAVIDWSKVKEVETVTAMIDVKVT 74 Query: 77 PERGRGFEGIAERIYLYPQVKSVYLMSGAYDLLVEVEGRNLREVANFVSEKLSPIDAVLS 136 P+RG GF+ +AERIY +P+VK++YLMSGAYDL V +EG+ + EVA FVSEKLS ID VLS Sbjct: 75 PQRGVGFDEVAERIYRFPEVKALYLMSGAYDLSVVIEGKTMSEVARFVSEKLSTIDTVLS 134 Query: 137 TKTNFTLKKYKQDGIIFEEHEEDNRLMISP 166 T T+F LKKYK DG++F++ E+D R++++P Sbjct: 135 TTTHFQLKKYKHDGVVFKKDEDDKRIVVTP 164 >ref|ZP_00061525.1| COG1522: Transcriptional regulators [Clostridium thermocellum ATCC 27405] Length = 159 Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 74/144 (51%), Positives = 112/144 (77%) Query: 18 DARSSTALMATLLGAEEEDVKQAIEEMERDHVIVKYATVVNWDKVSDERVTALIEVQITP 77 +++ S +A ++ E+V++AI++ E D+VI+ Y +++NW+K S E VTALIEV++TP Sbjct: 11 NSKISPEEIAVMVNKSVEEVREAIKKYEEDNVILGYMSLINWEKTSKESVTALIEVKVTP 70 Query: 78 ERGRGFEGIAERIYLYPQVKSVYLMSGAYDLLVEVEGRNLREVANFVSEKLSPIDAVLST 137 +RG GF+ +AERIY +P+VK+ YLMSG +DL V VEG+ ++EVA FV+EKLS +++VLST Sbjct: 71 QRGEGFDKVAERIYRFPEVKACYLMSGGFDLTVIVEGKTMKEVALFVAEKLSTLESVLST 130 Query: 138 KTNFTLKKYKQDGIIFEEHEEDNR 161 T+F LKKYK G IFE+ ++D+R Sbjct: 131 STHFVLKKYKDKGTIFEKKQKDDR 154 >ref|NP_847320.1| transcriptional regulator, AsnC family [Bacillus anthracis str. Ames] gb|AAP28806.1| transcriptional regulator, AsnC family [Bacillus anthracis str. Ames] Length = 168 Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 114/149 (76%), Gaps = 1/149 (0%) Query: 19 ARSSTALMATLLGAEEEDVKQAIEEMERDHVIVKYATVVNWDKVSDER-VTALIEVQITP 77 +R S +A LL E E+VK+ +E++E + +IV Y T ++W KV + +TA+I+V++TP Sbjct: 20 SRLSVDTLAKLLNIEVEEVKKMVEKLEAEKIIVDYVTHIDWTKVKEHTGLTAMIDVKVTP 79 Query: 78 ERGRGFEGIAERIYLYPQVKSVYLMSGAYDLLVEVEGRNLREVANFVSEKLSPIDAVLST 137 + G GF+ +AE+IY Y +VKSVYLMSG YDL + +EG+ + EVA FVSEKL+ I++V+ST Sbjct: 80 KHGVGFDAVAEQIYRYSEVKSVYLMSGTYDLSITLEGKTMGEVAMFVSEKLATIESVVST 139 Query: 138 KTNFTLKKYKQDGIIFEEHEEDNRLMISP 166 T+F LKKYK +GII+E++++D R++++P Sbjct: 140 TTHFILKKYKHEGIIYEKNDDDKRIVVTP 168 >ref|NP_981334.1| transcriptional regulator, AsnC family [Bacillus cereus ATCC 10987] gb|AAS43942.1| transcriptional regulator, AsnC family [Bacillus cereus ATCC 10987] Length = 165 Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 114/149 (76%), Gaps = 1/149 (0%) Query: 19 ARSSTALMATLLGAEEEDVKQAIEEMERDHVIVKYATVVNWDKVSDER-VTALIEVQITP 77 +R S +A LL E E+VK+ +E++E + +IV Y T ++W KV + +TA+I+V++TP Sbjct: 17 SRLSVDTLAKLLNIEVEEVKKMVEKLEAEKIIVDYVTHIDWTKVKEHTGLTAMIDVKVTP 76 Query: 78 ERGRGFEGIAERIYLYPQVKSVYLMSGAYDLLVEVEGRNLREVANFVSEKLSPIDAVLST 137 + G GF+ +AE+IY Y +VKSVYLMSG YDL + +EG+ + EVA FVSEKL+ I++V+ST Sbjct: 77 KHGVGFDAVAEQIYRYSEVKSVYLMSGTYDLSITLEGKTMGEVAMFVSEKLATIESVVST 136 Query: 138 KTNFTLKKYKQDGIIFEEHEEDNRLMISP 166 T+F LKKYK +GII+E++++D R++++P Sbjct: 137 TTHFILKKYKHEGIIYEKNDDDKRIVVTP 165 >ref|NP_653368.1| ASNC_trans_reg, AsnC family [Bacillus anthracis A2012] Length = 164 Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 114/149 (76%), Gaps = 1/149 (0%) Query: 19 ARSSTALMATLLGAEEEDVKQAIEEMERDHVIVKYATVVNWDKVSDER-VTALIEVQITP 77 +R S +A LL E E+VK+ +E++E + +IV Y T ++W KV + +TA+I+V++TP Sbjct: 16 SRLSVDTLAKLLNIEVEEVKKMVEKLEAEKIIVDYVTHIDWTKVKEHTGLTAMIDVKVTP 75 Query: 78 ERGRGFEGIAERIYLYPQVKSVYLMSGAYDLLVEVEGRNLREVANFVSEKLSPIDAVLST 137 + G GF+ +AE+IY Y +VKSVYLMSG YDL + +EG+ + EVA FVSEKL+ I++V+ST Sbjct: 76 KHGVGFDAVAEQIYRYSEVKSVYLMSGTYDLSITLEGKTMGEVAMFVSEKLATIESVVST 135 Query: 138 KTNFTLKKYKQDGIIFEEHEEDNRLMISP 166 T+F LKKYK +GII+E++++D R++++P Sbjct: 136 TTHFILKKYKHEGIIYEKNDDDKRIVVTP 164 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 202,278,931 Number of extensions: 7433048 Number of successful extensions: 17955 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 18043 Number of HSP's successfully gapped: 41 Length of query: 166 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 50 Effective length of database: 442,286,094 Effective search space: 22114304700 Effective search space used: 22114304700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 121 (51.2 bits)