BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0068.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693642.1| transcriptional antiterminator of glycerol upta... 169 4e-41 ref|NP_623578.1| Glycerol-3-phosphate responsive antiterminator ... 155 5e-37 ref|ZP_00144868.1| Glycerol uptake operon antiterminator regulat... 145 5e-34 ref|NP_229231.1| glycerol uptake operon antiterminator [Thermoto... 145 6e-34 ref|NP_830819.1| Glycerol uptake operon antiterminator regulator... 144 9e-34 >ref|NP_693642.1| transcriptional antiterminator of glycerol uptake operon [Oceanobacillus iheyensis HTE831] dbj|BAC14676.1| transcriptional antiterminator of glycerol uptake operon [Oceanobacillus iheyensis HTE831] Length = 188 Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 79/175 (45%), Positives = 120/175 (68%) Query: 13 RIIPAVRKAEDLQKACDSEWPMIFLLIGDLFTVKQYVRQGLEAGKKVFLHVDFIGGLGSD 72 ++I +V+K +DLQKA S +IFLL GDL + K+Y+ + EA K F+H+DFI GL + Sbjct: 11 QVIASVKKEQDLQKAVTSNANVIFLLTGDLLSTKKYIDRLKEANKSTFIHLDFIDGLTNS 70 Query: 73 PLVVKYIAEKIGPTGIISTKNHMVKQAKKSGLLAIQRLFLIDTSALEHGINNVRQNESDA 132 ++YIA + P GI++TK++++K AK+ L IQR+F+ID +AL G+ DA Sbjct: 71 RNAIQYIAREWKPLGIVTTKSNLIKYAKEENLATIQRIFVIDKNALAKGVEIANSVRPDA 130 Query: 133 LEVMPGLIPRVITELSSSTSRPIIAGGLIKDHQEIEAALQAGASAVSMGNPELWH 187 +E++PGL+P++I +++ T P+IAGGLI D QEI L+AGA A+S G+P LW+ Sbjct: 131 IEILPGLMPKIIDQITKQTHLPVIAGGLISDKQEIMNGLKAGALAISSGDPSLWN 185 >ref|NP_623578.1| Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Thermoanaerobacter tengcongensis] gb|AAM25182.1| Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Thermoanaerobacter tengcongensis] Length = 189 Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 121/186 (65%) Query: 1 VKNGLFAGSGNHRIIPAVRKAEDLQKACDSEWPMIFLLIGDLFTVKQYVRQGLEAGKKVF 60 +K+ + II AVR+ +D+++A S +IFLL GD+ + V + GK F Sbjct: 1 MKDKILETMTEFPIIAAVREIKDVKEAVSSNTQVIFLLSGDIMNICDLVDFIKKNGKIAF 60 Query: 61 LHVDFIGGLGSDPLVVKYIAEKIGPTGIISTKNHMVKQAKKSGLLAIQRLFLIDTSALEH 120 +H D I GLG D V+YIAE+I P GIIST+N+++ AK GL +IQRLF++D+ AL+ Sbjct: 61 VHFDLIEGLGKDTKAVEYIAERIKPHGIISTRNNILDHAKDFGLFSIQRLFMLDSQALKT 120 Query: 121 GINNVRQNESDALEVMPGLIPRVITELSSSTSRPIIAGGLIKDHQEIEAALQAGASAVSM 180 G+++ +Q DA+E++PG++P +I E+++ P+IAGGL++ +E+ A++AGA AVS Sbjct: 121 GLSSAKQIRPDAVEILPGIMPSIIKEVANDVLMPVIAGGLVRTKEEVINAIKAGAIAVST 180 Query: 181 GNPELW 186 LW Sbjct: 181 SEKSLW 186 >ref|ZP_00144868.1| Glycerol uptake operon antiterminator regulatory protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23535.1| Glycerol uptake operon antiterminator regulatory protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 186 Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 115/174 (66%) Query: 14 IIPAVRKAEDLQKACDSEWPMIFLLIGDLFTVKQYVRQGLEAGKKVFLHVDFIGGLGSDP 73 IIPA++ LQKA +S ++F+++ ++ +K++ + +A KKV++H+D I GL S Sbjct: 12 IIPAIKDNTTLQKALNSNSELVFIILSNIINIKEFTDKLKKANKKVYIHIDMIDGLNSTN 71 Query: 74 LVVKYIAEKIGPTGIISTKNHMVKQAKKSGLLAIQRLFLIDTSALEHGINNVRQNESDAL 133 + YI + P GI++TK+++V A K+ + IQR F++D+ + E + N+++N+ A+ Sbjct: 72 NGIDYIINTVKPDGILTTKSNVVAHAYKNNINVIQRFFILDSLSYEKALLNIKENKIVAV 131 Query: 134 EVMPGLIPRVITELSSSTSRPIIAGGLIKDHQEIEAALQAGASAVSMGNPELWH 187 E+MPGL+P++I +LS T PII GGLIK+ +++ A+ AGA +VS +LW Sbjct: 132 EIMPGLMPKIIKKLSQETHIPIITGGLIKEKEDVINAINAGALSVSTTEIKLWE 185 >ref|NP_229231.1| glycerol uptake operon antiterminator [Thermotoga maritima] pir||D72254 glycerol uptake operon antiterminator - Thermotoga maritima (strain MSB8) gb|AAD36501.1| glycerol uptake operon antiterminator [Thermotoga maritima] Length = 195 Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 114/175 (65%) Query: 12 HRIIPAVRKAEDLQKACDSEWPMIFLLIGDLFTVKQYVRQGLEAGKKVFLHVDFIGGLGS 71 + +IPAVR +D+++A +S +IFLL G + +++ V + K+VF+HVD + GL Sbjct: 18 YPVIPAVRAEKDIEEALESPSEVIFLLTGTVMNIEEIVYKLKNGKKEVFVHVDLVKGLSL 77 Query: 72 DPLVVKYIAEKIGPTGIISTKNHMVKQAKKSGLLAIQRLFLIDTSALEHGINNVRQNESD 131 D ++++ E +G GIIST H++K A+K G+ IQR+FL+D+ ALE G+ E D Sbjct: 78 DRCSLEFLREIVGVDGIISTHIHLLKIARKLGMRIIQRVFLVDSGALESGLAQAEDLEPD 137 Query: 132 ALEVMPGLIPRVITELSSSTSRPIIAGGLIKDHQEIEAALQAGASAVSMGNPELW 186 LE++PG++P I E++ S IIAGGLI+ +++ AAL+AGA A+S +LW Sbjct: 138 FLEILPGIVPEFIKEITKRYSGDIIAGGLIRKKEQVFAALEAGAKAISTSCKDLW 192 >ref|NP_830819.1| Glycerol uptake operon antiterminator regulatory protein [Bacillus cereus ATCC 14579] gb|AAP08020.1| Glycerol uptake operon antiterminator regulatory protein [Bacillus cereus ATCC 14579] Length = 186 Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 114/181 (62%) Query: 11 NHRIIPAVRKAEDLQKACDSEWPMIFLLIGDLFTVKQYVRQGLEAGKKVFLHVDFIGGLG 70 +I+PAVR+ +DL+K S + I +L + +K + + KKVFLHVD I GL Sbjct: 5 EQKILPAVRQIKDLEKLLHSSYEYIVILDIHVGQLKSVISLAKQYCKKVFLHVDLIHGLQ 64 Query: 71 SDPLVVKYIAEKIGPTGIISTKNHMVKQAKKSGLLAIQRLFLIDTSALEHGINNVRQNES 130 SD +Y+ ++ P G++STK ++ +AK+ G++AIQR+FLID+SA+E N + + + Sbjct: 65 SDGHATEYLCQEFRPYGLLSTKASVIMKAKQKGVVAIQRIFLIDSSAMEKSCNLLDKTKP 124 Query: 131 DALEVMPGLIPRVITELSSSTSRPIIAGGLIKDHQEIEAALQAGASAVSMGNPELWHSFA 190 D +EV+PG + VI E+ T PI+AGG I+ +++E AL AGA+A++ ELW + Sbjct: 125 DYIEVLPGALTDVIAEVKERTGVPILAGGFIRTVEDVERALNAGATAITTSKRELWKHYQ 184 Query: 191 Q 191 + Sbjct: 185 K 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 268,595,805 Number of extensions: 10060926 Number of successful extensions: 25833 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 25818 Number of HSP's successfully gapped: 31 Length of query: 192 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 73 Effective length of database: 434,140,797 Effective search space: 31692278181 Effective search space used: 31692278181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)