BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0060.p
         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN05451.1| hypothetical protein Orf1x [Clostridium cellulovo...    60   1e-08

>gb|AAN05451.1| hypothetical protein Orf1x [Clostridium cellulovorans]
          Length = 89

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 1  MATTSACKGCRDDYKV----TEAQIARILASSMFNEGNTASDQVYAERIALCSTCPKLQD 56
          M     CKGCR +  V     EA +  I  +S F+     S +VY  R+ +C  C     
Sbjct: 1  MEKKENCKGCRANVNVDINSIEALVEEIRNNSEFD---VVSSEVYDNRLNICKECKDFVY 57

Query: 57 GVTCTACGCIIPVVARLKARGCPLPGGGLW 86
          G TC  CGC + V A LK+  CP   G LW
Sbjct: 58 GTTCNQCGCFVKVRALLKSSVCPSYKGDLW 87


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 138,902,899
Number of extensions: 4484549
Number of successful extensions: 8129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8129
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 757,237,578
Length adjustment: 63
Effective length of query: 32
Effective length of database: 586,186,341
Effective search space: 18757962912
Effective search space used: 18757962912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)