BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0058.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00159846.1| hypothetical protein Avar347501 [Anabaena var... 269 5e-71 ref|NP_487983.1| cobalt transport protein [Nostoc sp. PCC 7120] ... 267 2e-70 ref|NP_661298.1| cobalamin biosynthesis protein CbiM [Chlorobium... 244 1e-63 ref|ZP_00181429.1| hypothetical protein Mther051301 [Moorella th... 238 8e-62 ref|ZP_00103075.1| COG0310: ABC-type Co2+ transport system, perm... 234 1e-60 >ref|ZP_00159846.1| hypothetical protein Avar347501 [Anabaena variabilis ATCC 29413] Length = 258 Score = 269 bits (687), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 150/236 (63%), Positives = 185/236 (78%) Query: 11 VLVGVFAVYLLLNEPGTAEAMHIMEGFLPVGXXXXXXXXXXXXXXLGVRKLTRMTRDNPE 70 +L+G+ + Y++++ A AMHIMEG+LP G LGVR LTR+T+ NPE Sbjct: 11 ILMGILSFYIIVSSSAPAYAMHIMEGYLPAGWAAFWWLVALPFMVLGVRSLTRITKANPE 70 Query: 71 LKLLLGLSGAFTFVLSALKMPSVTGSSSHPTGTGLGAVMLGPLPMSVTGSIVLLFQALLL 130 LKLLL L+GAFTFVLSALK+PSVTGS SHPTGTGLGAV+ GPL MSV GS+VLLFQALLL Sbjct: 71 LKLLLALAGAFTFVLSALKLPSVTGSCSHPTGTGLGAVLFGPLAMSVLGSLVLLFQALLL 130 Query: 131 AHGGITTLGANAFSMAVAGPFAGYAVYKLIMRLGEREKLXXXXXXXXXDLMTYVVTSFQL 190 AHGG+TTLGANAFSMA+AGPFA Y +Y L ++L ++++ DL+TY++TS QL Sbjct: 131 AHGGLTTLGANAFSMAIAGPFAAYWIYHLTIQLTGKQRIAIFLAATLADLLTYIITSVQL 190 Query: 191 AVAFPSADGGVLASMAKFGGIFAVTQIPLAVSEGLLTVLLWNWLKAYSPQELSLLK 246 A+AFP+ GG +AS AKF GIFA+TQIPLA+SEGLLTVL+WNWL++YSPQEL LLK Sbjct: 191 ALAFPAPVGGFIASFAKFAGIFAITQIPLAISEGLLTVLVWNWLQSYSPQELQLLK 246 >ref|NP_487983.1| cobalt transport protein [Nostoc sp. PCC 7120] pir||AH2298 cobalt transport protein cbiM [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB75642.1| cobalt transport protein [Nostoc sp. PCC 7120] Length = 261 Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/236 (63%), Positives = 185/236 (78%) Query: 11 VLVGVFAVYLLLNEPGTAEAMHIMEGFLPVGXXXXXXXXXXXXXXLGVRKLTRMTRDNPE 70 +L+G+ + Y++++ A AMHIMEG+LP G LGVR LTR+T+ NPE Sbjct: 14 ILMGMLSFYIIVSASAPAYAMHIMEGYLPAGWAAFWWLVALPFMLLGVRSLTRITKANPE 73 Query: 71 LKLLLGLSGAFTFVLSALKMPSVTGSSSHPTGTGLGAVMLGPLPMSVTGSIVLLFQALLL 130 LKLLL L+GAFTFVLSALK+PSVTGS SHPTGTGLG+V+ GPL MSV GS+VLLFQALLL Sbjct: 74 LKLLLALAGAFTFVLSALKLPSVTGSCSHPTGTGLGSVLFGPLAMSVLGSLVLLFQALLL 133 Query: 131 AHGGITTLGANAFSMAVAGPFAGYAVYKLIMRLGEREKLXXXXXXXXXDLMTYVVTSFQL 190 AHGG+TTLGANAFSMA+AGPFA Y +Y L ++L ++++ DL+TY++TS QL Sbjct: 134 AHGGLTTLGANAFSMAIAGPFAAYWIYHLTIKLTGKQRIAIFLAATLADLLTYIITSVQL 193 Query: 191 AVAFPSADGGVLASMAKFGGIFAVTQIPLAVSEGLLTVLLWNWLKAYSPQELSLLK 246 A+AFP+ GG +AS AKF GIFA+TQIPLA+SEGLLTVL+WNWL++YSPQEL LLK Sbjct: 194 ALAFPAPVGGFIASFAKFAGIFAITQIPLAISEGLLTVLVWNWLQSYSPQELQLLK 249 >ref|NP_661298.1| cobalamin biosynthesis protein CbiM [Chlorobium tepidum TLS] gb|AAM71640.1| cobalamin biosynthesis protein CbiM [Chlorobium tepidum TLS] Length = 251 Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 155/226 (68%) Query: 17 AVYLLLNEPGTAEAMHIMEGFLPVGXXXXXXXXXXXXXXLGVRKLTRMTRDNPELKLLLG 76 AV +L G A AMHIMEGFLP G LG L R+ NP +KLLL Sbjct: 15 AVAFMLFGGGEAYAMHIMEGFLPPGWSLFWWLVSLPFFVLGFISLRRIVASNPRMKLLLA 74 Query: 77 LSGAFTFVLSALKMPSVTGSSSHPTGTGLGAVMLGPLPMSVTGSIVLLFQALLLAHGGIT 136 ++GAF FVLS+LK+PSVTGS SHPTG GLGA+M GP MSV G+IVLLFQALLLAHGG+T Sbjct: 75 MAGAFAFVLSSLKIPSVTGSCSHPTGVGLGAIMFGPSVMSVLGAIVLLFQALLLAHGGLT 134 Query: 137 TLGANAFSMAVAGPFAGYAVYKLIMRLGEREKLXXXXXXXXXDLMTYVVTSFQLAVAFPS 196 TLGANAFSMA+ GPF + +YKL L L DL TYVVTSFQLA AFPS Sbjct: 135 TLGANAFSMAITGPFVSWGLYKLFDSLRSPRWLSVFVAASIGDLATYVVTSFQLAFAFPS 194 Query: 197 ADGGVLASMAKFGGIFAVTQIPLAVSEGLLTVLLWNWLKAYSPQEL 242 GGV+AS KF GIFA+TQ+PLAVSEG+LTV+++N + AY+ Q Sbjct: 195 ITGGVVASAVKFLGIFAITQVPLAVSEGILTVMVYNAIMAYTGQSF 240 >ref|ZP_00181429.1| hypothetical protein Mther051301 [Moorella thermoacetica ATCC 39073] Length = 244 Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 131/230 (56%), Positives = 159/230 (69%), Gaps = 5/230 (2%) Query: 28 AEAMHIMEGFLPVGXXXXXXXXXXXXXXLGVRKLTRMTRDNPELKLLLGLSGAFTFVLSA 87 A AMHI EGFLP G+R + + NP LK+LLGL+GA+TFVLSA Sbjct: 8 AFAMHIAEGFLPFNWAAFWFIVVLPFWIWGLRSIRHTVKSNPGLKMLLGLAGAYTFVLSA 67 Query: 88 LKMPSVTGSSSHPTGTGLGAVMLGPLPMSVTGSIVLLFQALLLAHGGITTLGANAFSMAV 147 LK+PSVTGS SHPTG GLGAV+ GP MS+ G IVLLFQALLLAHGG++TLGAN FSMAV Sbjct: 68 LKLPSVTGSCSHPTGIGLGAVLFGPAAMSILGGIVLLFQALLLAHGGLSTLGANTFSMAV 127 Query: 148 AGPFAGYAVYKLIMRLGEREKLXXXXXXXXXDLMTYVVTSFQLAVAFPSADGGVLASMAK 207 GPF Y +Y+L+ +L L DLMTYV TS QLA+AFP+ GGV+ASM K Sbjct: 128 VGPFVAYGLYRLVRKLKGSMPLAVFLAATLGDLMTYVTTSLQLALAFPAQAGGVVASMLK 187 Query: 208 FGGIFAVTQIPLAVSEGLLTVLLWNWLKAYSP---QELSLL--KRGAKGG 252 F GIFAVTQ+PLA+SEG LTV+++N L Y+ +ELS++ K A+GG Sbjct: 188 FMGIFAVTQLPLAISEGFLTVIVFNLLATYNKNDLEELSIMPGKTAAEGG 237 >ref|ZP_00103075.1| COG0310: ABC-type Co2+ transport system, permease component [Desulfitobacterium hafniense] Length = 233 Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 125/222 (56%), Positives = 149/222 (67%) Query: 25 PGTAEAMHIMEGFLPVGXXXXXXXXXXXXXXLGVRKLTRMTRDNPELKLLLGLSGAFTFV 84 P A AMHIMEGFL G LG+ + + NP LK+LL ++GAF FV Sbjct: 6 PYKASAMHIMEGFLQPGWAIAWGALAIPFVVLGIFSIKKTISLNPRLKILLAMAGAFVFV 65 Query: 85 LSALKMPSVTGSSSHPTGTGLGAVMLGPLPMSVTGSIVLLFQALLLAHGGITTLGANAFS 144 LSALK+PSVTGS SHPTG G GA++ GP M+V G IVLLFQALLLAHGG+TTLGAN FS Sbjct: 66 LSALKLPSVTGSCSHPTGVGFGAILFGPTAMAVIGVIVLLFQALLLAHGGLTTLGANTFS 125 Query: 145 MAVAGPFAGYAVYKLIMRLGEREKLXXXXXXXXXDLMTYVVTSFQLAVAFPSADGGVLAS 204 MAV GPF + VYKL+ + + L DL TYV+TS QLA+AFPS GG AS Sbjct: 126 MAVVGPFVAFGVYKLVQKFKGPQWLGVFLAASLGDLATYVMTSIQLALAFPSEVGGFAAS 185 Query: 205 MAKFGGIFAVTQIPLAVSEGLLTVLLWNWLKAYSPQELSLLK 246 + KF IFAVTQIPLA+SEG+LTV+++N L +Y EL LK Sbjct: 186 LTKFASIFAVTQIPLAISEGILTVIIFNALASYGKSELQDLK 227 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 319,640,735 Number of extensions: 11191985 Number of successful extensions: 27096 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 27046 Number of HSP's successfully gapped: 72 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)