BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0057.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_487984.1| cobalt transport protein [Nostoc sp. PCC 7120] ...    72   3e-12
ref|NP_561109.1| probable cobalt transport protein [Clostridium ...    72   3e-12
ref|ZP_00159847.1| hypothetical protein Avar347601 [Anabaena var...    72   5e-12
ref|NP_661297.1| cobalt transport protein [Chlorobium tepidum TL...    67   1e-10
ref|NP_630077.1| puative cobalt transport protein [Streptomyces ...    64   9e-10

>ref|NP_487984.1| cobalt transport protein [Nostoc sp. PCC 7120]
 sp|Q8YQ90|CBIN_ANASP Cobalt transport protein cbiN
 pir||AI2298 cobalt transport protein cbiN [imported] - Nostoc sp.  (strain
          PCC 7120)
 dbj|BAB75643.1| cobalt transport protein [Nostoc sp. PCC 7120]
          Length = 100

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGLLKGRQGRQK 94
          I+E+ P Y+PWFKPL E P GE ES+LF+ QAA+GAG+IGY +GL KGR  +Q+
Sbjct: 44 ISEVKPGYEPWFKPLFEPPSGEVESLLFSSQAALGAGIIGYAVGLYKGRSQQQR 97


>ref|NP_561109.1| probable cobalt transport protein [Clostridium perfringens]
 sp|Q8XNY9|CBIN_CLOPE Cobalt transport protein cbiN
 dbj|BAB79899.1| probable cobalt transport protein [Clostridium perfringens str. 13]
          Length = 103

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 4/60 (6%)

Query: 42  ITEIDPAYKPWFKPLAE-LPGETESMLFALQAAIGAGVIGYTLGLLKGRQGRQKLNDQKN 100
           IT+ID  Y+PWF PL E   GE ES+LFALQAAIGAGVIG+ LG LK   G++K+ND+ N
Sbjct: 43  ITQIDENYEPWFSPLFEPASGEIESLLFALQAAIGAGVIGFGLGYLK---GKKKVNDEVN 99


>ref|ZP_00159847.1| hypothetical protein Avar347601 [Anabaena variabilis ATCC 29413]
          Length = 100

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGLLKGRQGRQK 94
          I+E+ P Y+PWFKPL E P GE ES+LF+ QAA+GAG+IGY +GL KGR  +Q+
Sbjct: 44 ISEVKPGYEPWFKPLFEPPSGEVESLLFSSQAALGAGIIGYAVGLYKGRSQQQR 97


>ref|NP_661297.1| cobalt transport protein [Chlorobium tepidum TLS]
 gb|AAM71639.1| cobalt transport protein [Chlorobium tepidum TLS]
          Length = 106

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 42  ITEIDPAYKPWFKPLAELPG-ETESMLFALQAAIGAGVIGYTLGLLKGRQGRQKLNDQ 98
           IT++ P YK WF P  E PG E ES+LFALQAAIGAGV+GY LG L+G+        Q
Sbjct: 49  ITQLHPEYKRWFTPFWEPPGGEVESLLFALQAAIGAGVLGYGLGFLRGKHEASGFEQQ 106


>ref|NP_630077.1| puative cobalt transport protein [Streptomyces coelicolor A3(2)]
 sp|O54189|CBIN_STRCO Cobalt transport protein cbiN
 pir||T35725 probable cobalt transport protein cbiN - Streptomyces coelicolor
 emb|CAA16217.1| puative cobalt transport protein [Streptomyces coelicolor A3(2)]
          Length = 118

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 42 ITEIDPAYKPWFKPLAELP-GETESMLFALQAAIGAGVIGYTLGL 85
          ITEI+P Y+PWF PL E P GE ES LFALQAA+GAGV+ Y  GL
Sbjct: 46 ITEIEPDYEPWFSPLHEPPSGEVESALFALQAALGAGVLAYYFGL 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 101,348,366
Number of extensions: 2707556
Number of successful extensions: 5186
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 5164
Number of HSP's successfully gapped: 24
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)