BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0055.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00159849.1| hypothetical protein Avar347801 [Anabaena var... 229 5e-59 ref|NP_487986.1| cobalt transport ATP-binding protein [Nostoc sp... 229 6e-59 ref|NP_683229.1| ATP-binding protein of cobalt ABC transporter [... 221 1e-56 ref|ZP_00181432.1| hypothetical protein Mther051601 [Moorella th... 216 6e-55 ref|NP_618433.1| cobalt ABC transporter, ATP-binding protein [Me... 202 1e-50 >ref|ZP_00159849.1| hypothetical protein Avar347801 [Anabaena variabilis ATCC 29413] Length = 274 Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 113/229 (49%), Positives = 151/229 (65%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 LAFE + + YP T + L G+T IP+G + AL+G NG GK+TLF A GL +PQ G V Sbjct: 6 LAFEQIHYTYPGTQQSVLNGITLQIPQGKRCALIGRNGCGKTTLFSLANGLYKPQQGCVY 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 + Y +K L LR++VGLVFQ+PEQQL+ ST EDIS+GL G+P A+I R Sbjct: 66 WQEKALQYDRKTLIQLRQKVGLVFQNPEQQLVASTVEEDISYGLCNLGLPIADIQQRVTQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L LT L ++P+H LSLGQKKR +LA V+ + PEL+LLDEPT+YLD L+ L Sbjct: 126 ALVEFELTELAERPVHHLSLGQKKRVSLADVMVLRPELLLLDEPTAYLDRPQSRNLMAML 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 + I++ GTT++MA+HD++L Y W+DWI V+D G G PE IF+ E Sbjct: 186 NKIYQSGTTILMASHDLDLVYCWSDWIFVMDAGRLILEGKPENIFSQRE 234 >ref|NP_487986.1| cobalt transport ATP-binding protein [Nostoc sp. PCC 7120] pir||AC2299 cobalt transport ATP-binding protein cbiO [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB75645.1| cobalt transport ATP-binding protein [Nostoc sp. PCC 7120] Length = 274 Score = 229 bits (584), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 150/229 (65%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 L FE V + YP T + L G+T IP+G + AL+G NG GK+TLF A GL +PQ G V Sbjct: 6 LTFEQVYYTYPGTQQSVLNGITLQIPQGKRCALIGRNGCGKTTLFSLANGLYKPQQGRVY 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 + Y +K L LR++VGLVFQ+PEQQL+ ST EDIS+GL G+P A+I R Sbjct: 66 WQEKALQYDRKNLMQLRQKVGLVFQNPEQQLVASTVEEDISYGLCNLGLPIADIQQRVTQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L LT L ++P+H LSLGQKKR +LA V+ + PEL+LLDEPT+YLD L+ L Sbjct: 126 ALVEFELTELAERPVHHLSLGQKKRVSLADVMVLRPELLLLDEPTAYLDRPQSRNLMAML 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 + I++ GTT++MA+HD++L Y W+DW+ V+D G G PE IF+ E Sbjct: 186 NKIYKSGTTILMASHDLDLVYCWSDWVFVMDAGRLILEGKPEDIFSQRE 234 >ref|NP_683229.1| ATP-binding protein of cobalt ABC transporter [Thermosynechococcus elongatus BP-1] dbj|BAC09991.1| ATP-binding protein of cobalt ABC transporter [Thermosynechococcus elongatus BP-1] Length = 284 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 120/269 (44%), Positives = 155/269 (57%), Gaps = 1/269 (0%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 L F V F YP+T EP LR + + G K ALLG NGSGKSTLF A L R G + Sbjct: 6 LEFHQVGFRYPNTPEPVLRDCSFTLEAGRKVALLGLNGSGKSTLFYLAAALYRRDRGEIY 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 G + + + L R+R+GL FQDPEQQL+ +T EDIS+GL G+ E+ AR Sbjct: 66 CQGQRLVHQPQRLRQWRQRIGLAFQDPEQQLVAATVAEDISYGLCNLGLSPPEVAARLHQ 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 L+ +L AL D+P+H LSLGQK+R ALAGV+A+ P L+LLDEPT+YLD QL + L Sbjct: 126 TLQEFDLVALADRPLHHLSLGQKRRVALAGVMALAPTLLLLDEPTTYLDYQQRQQLRELL 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGEXXXXXXXXXXX 266 + IH++GTT+V+ATHD++ AY WADWI++L G + +F G Sbjct: 186 EKIHQQGTTIVIATHDLDFAYGWADWIMILVNGQVSVSDRASHVF-GQWPTFAPELGTPT 244 Query: 267 XXELWHSLPPRVTAGHAAPRNAEEFKAAL 295 LW LPP PR EF L Sbjct: 245 LLGLWQQLPPAWRQHRPFPRTVTEFSREL 273 >ref|ZP_00181432.1| hypothetical protein Mther051601 [Moorella thermoacetica ATCC 39073] Length = 287 Score = 216 bits (549), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 108/222 (48%), Positives = 149/222 (67%), Gaps = 1/222 (0%) Query: 30 EDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVRQAG 89 E V F YPD AL+ +T +IP G K A+LG NG+GKSTLFLH G+LRPQ G + AG Sbjct: 11 EAVSFTYPDGTR-ALQNVTLSIPEGKKIAVLGPNGAGKSTLFLHFNGILRPQEGWIYFAG 69 Query: 90 LPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAAVLE 149 +SY+ L LR++VG+VFQDP+ L ++ ++ISFG G+ + E+ AR A + Sbjct: 70 ARISYSHTALQQLRQQVGIVFQDPDSMLFAASVRQEISFGPLNLGLSKEEVLARVEAAMA 129 Query: 150 LLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGLDSI 209 + L DKP H LS GQKKR A+A V+AMEP +I+ DEPT+YLDP S +++ L++I Sbjct: 130 ATGVKDLGDKPTHFLSYGQKKRVAIASVLAMEPRVIIFDEPTAYLDPRSTREVMALLETI 189 Query: 210 HRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIF 251 RKGTT++++THD+++AY WAD+I VL G AG P +F Sbjct: 190 SRKGTTIILSTHDVDIAYTWADYIYVLAAGQVIGAGTPAEVF 231 >ref|NP_618433.1| cobalt ABC transporter, ATP-binding protein [Methanosarcina acetivorans str. C2A] gb|AAM06913.1| cobalt ABC transporter, ATP-binding protein [Methanosarcina acetivorans str. C2A] Length = 453 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 154/267 (57%), Gaps = 4/267 (1%) Query: 34 FHYPD-TVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVRQAGLPV 92 + YPD TV AL+G+ I +G K A +G NGSGKSTLFL G L+PQ G + G P Sbjct: 11 YTYPDGTV--ALQGINIEIKKGKKIAFVGQNGSGKSTLFLLLNGTLKPQEGEILFHGSPF 68 Query: 93 SYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAAVLELLN 152 Y K L +R+ VG+VFQ+ + Q+ T +D++FG G + I A LE + Sbjct: 69 KYDSKSLREIRKSVGIVFQNSDDQIFAPTVYQDVAFGPANLGYSKERIDASVQHALEHVG 128 Query: 153 LTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGLDSIHRK 212 LT LKDKP H LS GQKKR A+AGV+AMEPE+I+LDEP S LDP+ +++D L+ + Sbjct: 129 LTRLKDKPPHHLSGGQKKRVAIAGVMAMEPEVIILDEPLSNLDPVGADEIMDLLNEFNHF 188 Query: 213 GTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGEXXXXXXXXXXXXXELWH 272 G+T++++THD++LAYRW+D++ ++ G P +F E E++H Sbjct: 189 GSTIIISTHDVDLAYRWSDYVYLMSNSKLIGQGTPAEVFKEQELLKKAGLRQPTTLEIYH 248 Query: 273 SLPPR-VTAGHAAPRNAEEFKAALSSL 298 + R + G +P+ E L L Sbjct: 249 EIERRGLAYGKNSPKTIPELVNTLKPL 275 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 434,472,129 Number of extensions: 17039156 Number of successful extensions: 103271 Number of sequences better than 1.0e-05: 18026 Number of HSP's gapped: 82275 Number of HSP's successfully gapped: 19079 Length of query: 306 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 181 Effective length of database: 417,850,203 Effective search space: 75630886743 Effective search space used: 75630886743 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)