BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0043.p
         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_464340.1| similar to fructokinases [Listeria monocytogene...    74   8e-13
ref|NP_470151.1| similar to fructokinases [Listeria innocua] >gi...    74   1e-12
ref|NP_348150.1| Fructokinase [Clostridium acetobutylicum] >gi|2...    68   6e-11
ref|ZP_00017111.1| hypothetical protein [Chloroflexus aurantiacus]     61   7e-09
ref|NP_388467.1| similar to fructokinase [Bacillus subtilis] >gi...    56   2e-07

>ref|NP_464340.1| similar to fructokinases [Listeria monocytogenes EGD-e]
 pir||AE1176 fructokinases homolog lmo0813 [imported] - Listeria monocytogenes
           (strain EGD-e)
 emb|CAC98891.1| lmo0813 [Listeria monocytogenes]
          Length = 290

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 44/57 (77%), Gaps = 4/57 (7%)

Query: 1   MNYVLILSPQKIVMGGGVMKQSQLFPLIHAKLQELLGGYVQHPALNEAVGSYIVPPQ 57
           MNY LILSP++IV+GGGVMKQ QLFPL+  KL+ L+  YVQ P L+E    YIVPP+
Sbjct: 217 MNYTLILSPERIVLGGGVMKQRQLFPLVRQKLKALVNNYVQLPDLDE----YIVPPK 269


>ref|NP_470151.1| similar to fructokinases [Listeria innocua]
 pir||AI1533 fructokinases homolog lin0809 [imported] - Listeria innocua
           (strain Clip11262)
 emb|CAC96041.1| lin0809 [Listeria innocua]
          Length = 290

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 44/57 (77%), Gaps = 4/57 (7%)

Query: 1   MNYVLILSPQKIVMGGGVMKQSQLFPLIHAKLQELLGGYVQHPALNEAVGSYIVPPQ 57
           MNY LILSP++IV+GGGVMKQ QLFPL+  KL+ L+  YVQ P L+E    YIVPP+
Sbjct: 217 MNYTLILSPERIVLGGGVMKQRQLFPLVRQKLKALVNNYVQLPDLDE----YIVPPK 269


>ref|NP_348150.1| Fructokinase [Clostridium acetobutylicum]
 pir||G97087 fructokinase [imported] - Clostridium acetobutylicum
 gb|AAK79490.1| Fructokinase [Clostridium acetobutylicum]
          Length = 288

 Score = 68.2 bits (165), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 39/56 (69%), Gaps = 4/56 (7%)

Query: 1   MNYVLILSPQKIVMGGGVMKQSQLFPLIHAKLQELLGGYVQHPALNEAVGSYIVPP 56
           M Y L LSP++IV+GGGVMKQ QLFPLI   L++L+  YV  P L E    YIVPP
Sbjct: 215 MTYTLTLSPERIVLGGGVMKQLQLFPLIRKHLEKLMANYVAMPNLEE----YIVPP 266


>ref|ZP_00017111.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 260

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 2   NYVLILSPQKIVMGGGVMKQSQLFPLIHAKLQELLGGYVQHPALNEAVGSYIVPP 56
           N + ILSP++I++GGGVM Q Q+FPL+ A  Q  L GY+QHP + +     IVPP
Sbjct: 184 NLLCILSPERIIIGGGVMSQPQMFPLVRAATQRWLNGYLQHPHILDHPDRLIVPP 238


>ref|NP_388467.1| similar to fructokinase [Bacillus subtilis]
 sp|O05510|SCRK_BACSU Putative fructokinase
 pir||F69785 fructokinase homolog ydhR - Bacillus subtilis
 dbj|BAA19710.1| S. mutans fructokinase; Q07211 (665) [Bacillus subtilis]
 emb|CAB12405.1| ydhR [Bacillus subtilis subsp. subtilis str. 168]
          Length = 299

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 40/55 (72%)

Query: 3   YVLILSPQKIVMGGGVMKQSQLFPLIHAKLQELLGGYVQHPALNEAVGSYIVPPQ 57
           Y+LIL+P+KI++GGGVM+Q Q+F  I+  + +++  Y+    L++ +  YIVPP+
Sbjct: 216 YILILAPKKIILGGGVMQQKQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPR 270


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 87,179,941
Number of extensions: 2472044
Number of successful extensions: 4696
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4698
Number of HSP's successfully gapped: 10
Length of query: 78
Length of database: 757,237,578
Length adjustment: 48
Effective length of query: 30
Effective length of database: 626,912,826
Effective search space: 18807384780
Effective search space used: 18807384780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)