BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0035.p (1395 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388665.1| similar to 2',3'-cyclic-nucleotide 2'-phosphodi... 673 0.0 ref|NP_295459.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [D... 518 e-145 ref|NP_102177.1| probable multifunctional phosphoesterase [Mesor... 509 e-142 ref|NP_759710.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [V... 504 e-141 ref|NP_354227.1| AGR_C_2233p [Agrobacterium tumefaciens] >gi|179... 503 e-140 >ref|NP_388665.1| similar to 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Bacillus subtilis] pir||A69809 probable multifunctional phosphoesterase (EC 3.1.-.-) yfkN - Bacillus subtilis dbj|BAA23404.1| YfkN [Bacillus subtilis] emb|CAB12613.1| yfkN [Bacillus subtilis subsp. subtilis str. 168] Length = 1462 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/1202 (37%), Positives = 637/1202 (52%), Gaps = 121/1202 (10%) Query: 1 MSTTDVHTNVYGWDYFKNAVSASVGLDRTSTLVKEARTEQPNNLLLDNGDLIQGTPLGTY 60 ++TTD+H N+ +DY+ + +A GL RT+ L+++ R + PN LL+DNGDLIQG PLG Y Sbjct: 48 LATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPLGEY 107 Query: 61 MAKESGFEE-SADQIHPLIAAMNVMKYDAATFGNHEFNYGLNYLDRTINGSPADKSNTDA 119 K + S + HP+I+ MN +KYDA T GNHEFNYGL++LD TI G A Sbjct: 108 AVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEFNYGLDFLDGTIKG---------A 158 Query: 120 DFPYVNANIYNVSDGKNTFEPYVIIPKKVTDSQGNEVTIDVGLLGLVTPQIMDWDKVNLE 179 DFP VNAN+ S G+N + PYVI K + D GNE + VG +G V PQIM WDK NLE Sbjct: 159 DFPIVNANVKTTS-GENRYTPYVINEKTLIDENGNEQKVKVGYIGFVPPQIMTWDKKNLE 217 Query: 180 GRVITKDIAETAAKFVPEMKAKGADVVIAMAHTGFDAAAVIGDGSENDINAL-SKVPGID 238 G+V +DI E+A + +P+MKA+GADV+IA+AHTG + A G+EN + L +K GID Sbjct: 218 GQVQVQDIVESANETIPKMKAEGADVIIALAHTGIEKQAQ-SSGAENAVFDLATKTKGID 276 Query: 239 AITFSHTHKVFPTNGDDTKLDASFKDPATKKPYDSAVAKIDNVNGHINDTPAVQAGYGGG 298 AI H H +FP+ A + + VA+ + G IN P V G Sbjct: 277 AIISGHQHGLFPS--------AEY----------AGVAQFNVEKGTINGIPVVMPSSWGK 318 Query: 299 NLGLIDLKIVSDGSSWKVDKAASKASTRSIAG--VEVDPXXXXXXXXXXXXTIEYVNQPL 356 LG+IDLK+ SWKV A SK S SIAG + T+EYV +P+ Sbjct: 319 YLGVIDLKLEKADGSWKV--ADSKGSIESIAGNVTSRNETVTNTIQQTHQNTLEYVRKPV 376 Query: 357 GTTIAPMNSYFALVQDDPTVQIVTYAQQQYVSNLVNTDAALAKYKNLPILSVGAPFKAG- 415 G T A +NS+FA V+DDP++QIVT AQ+ Y + +YKNLPILS GAPFKAG Sbjct: 377 GKTEADINSFFAQVKDDPSIQIVTDAQKWYAEKEMKD----TEYKNLPILSAGAPFKAGG 432 Query: 416 RNGPEEYTEIKAGDLTIASASDLYLYDNTLKAIVVKGSTVKEWVEMSAGAFNRIKPAIST 475 RNG YT I AGDL I + DLYLYDNT++ + + GS VK+W+EMSAG FN+I PA Sbjct: 433 RNGANYYTNIPAGDLAIKNVGDLYLYDNTVQIVKLTGSEVKDWLEMSAGQFNQIDPAKGG 492 Query: 476 PQPLLNSAFAVYNFDVIDGIQYTIDVTKNAKYKPDGTVNDASSSRVTSITYGNEPLNPEQ 535 Q LLN F YNFDVIDG+ Y +DVTK AKY +G V +A SSR+ +++Y +P++P Q Sbjct: 493 DQALLNENFRSYNFDVIDGVTYQVDVTKPAKYNENGKVINADSSRIINLSYEGKPISPSQ 552 Query: 536 DFIVVTNNYRASGGGNFPDVKGAQMIIDSQMENRQVLMDYISAAGTVNPTADNNWSIAPI 595 +F+VVTNNYRASGGG FP + +++ S +ENRQVLMDYI TVNP ADNNWSIAP+ Sbjct: 553 EFLVVTNNYRASGGGGFPHLTSDKIVHGSAVENRQVLMDYIIEQKTVNPKADNNWSIAPV 612 Query: 596 QGNVNVTFTSS--PKAAAVKPDNVTDTGNKDIKGFEIYNLNLKQNV---PAPTGDVEVHL 650 G N+TF SS K A K D+V G +G+ +Y L + P G ++ + Sbjct: 613 SG-TNLTFESSLLAKPFADKADDVAYVGKSANEGYGVYKLQFDDDSNPDPPKDGLWDLTV 671 Query: 651 LGINDFHGQLDTTSYVGSDAVGTAATLAAYLKNTRSQYANSLLFHNGDSVGASAPVSSLE 710 + ND H LD AA + RS+ +++L GD + Sbjct: 672 MHTNDTHAHLD-----------DAARRMTKINEVRSETNHNILLDAGDVFSGDLYFTKW- 719 Query: 711 RDEPTMEWMNLMKFDVGSLGNHEFDQGVESMKTQIYGGKDPKTINNTSIVH-KGADFDYI 769 ++ MN+M +D + GNHEFD+G + + G + T++ + H + +F + Sbjct: 720 NGLADLKMMNMMGYDAMTFGNHEFDKGPTVLSDFLSG--NSATVDPANRYHFEAPEFPIV 777 Query: 770 NANAIDSSTGVPI-------------------INPYXXXXXXXXXXXXXXXXXXATPSKV 810 +AN +D S + I+PY T + Sbjct: 778 SAN-VDVSNEPKLKSFVKKPQTFTAGEKKEAGIHPYILLDVDGEKVAVFGLTTEDTATTS 836 Query: 811 SPAGTAGVK--FLSASEEVEAIEKYAAELQKKGVQTIVVLAHDPATTKGDSTTGEAADLA 868 SP + F +A V+AI+ +++ V I+ L H G DL Sbjct: 837 SPGKSIVFNDAFETAQNTVKAIQ------EEEKVNKIIALTH----------IGHNRDLE 880 Query: 869 KALPADSPVDVVVAGDNHGFAN--AIVNNK---LIVQAYSYGTAFEDIKLVIDPITQDVK 923 A +D+++ G H + +VNN+ ++ QA YG + + D Sbjct: 881 LAKKVKG-IDLIIGGHTHTLVDKMEVVNNEEPTIVAQAKEYGQFLGRVDVAFDEKGVVQT 939 Query: 924 SKSATVTSTIQKNVTPDKETQDLVNYYLNKHPEL-TKPVGTTDGTI--TRTDAYNNESNL 980 KS I ++ + E + ++ + N+ ++ + VG TD + R E+NL Sbjct: 940 DKSNLSVLPIDEHTEENPEAKQELDQFKNELEDVKNEKVGYTDVALDGQREHVRTKETNL 999 Query: 981 GNLIADAMRQADFGDGKGSADFAFMNPGGIRADLPKGNVSFGDLAKVQPFGNTLVKLTLT 1040 GN IAD M A + G A A N GGIRA + KG+++ G++ V PFGNTL LT Sbjct: 1000 GNFIADGML-AKAKEAAG-ARIAITNGGGIRAGIDKGDITLGEVLNVMPFGNTLYVADLT 1057 Query: 1041 GEQIKTLLQQQWGTKADGTADTKTLQISGLKYTANMYLPVADRIASLT----KTDGTPIS 1096 G+QIK L+Q +G Q++G++YT + R+ + D I+ Sbjct: 1058 GKQIKEALEQGLSNVENGGGAFP--QVAGIEYTFTLNNKPGHRVLEVKIESPNGDKVAIN 1115 Query: 1097 MTQSYTAVVNNFMAAGGDNYSVLTKAS--ESLAGPIDLDVFYDYVKKTFKGGPITAAIEG 1154 +Y NNF+ AGGD YSV T+AS E L G +D ++F + +KK G ++ +EG Sbjct: 1116 TDDTYRVATNNFVGAGGDGYSVFTEASHGEDL-GYVDYEIFTEQLKKL--GNKVSPKVEG 1172 Query: 1155 RI 1156 RI Sbjct: 1173 RI 1174 >ref|NP_295459.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Deinococcus radiodurans] pir||B75360 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16) DR1736 [similarity] - Deinococcus radiodurans (strain R1) gb|AAF11292.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Deinococcus radiodurans] Length = 678 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 283/651 (43%), Positives = 390/651 (59%), Gaps = 57/651 (8%) Query: 1 MSTTDVHTNVYGWDYFKNAVSASVGLDRTSTLVKEARTEQPNNLLLDNGDLIQGTPLGTY 60 + TTD+HTN G+DY+++ + GL+ T+TL+K+AR E+ N LL DNGDLIQGTPLG Y Sbjct: 69 LETTDLHTNALGYDYYQDKPTGEFGLEYTATLLKQAREEKRNTLLYDNGDLIQGTPLGDY 128 Query: 61 MAKESGFEESADQIHPLIAAMNVMKYDAATFGNHEFNYGLNYLDRTINGSPADKSNTDAD 120 +A+ A Q+HPL AAM ++KYDAA GNHEFNYGL +L + + +P Sbjct: 129 VARVQPLR--AGQMHPLHAAMRLLKYDAANLGNHEFNYGLPFLQQVVAAAP--------- 177 Query: 121 FPYVNANIY----NVSDGKNTFEPYVIIPKKVTDSQGNEVTIDVGLLGLVTPQIMDWDKV 176 P V+AN Y N G N F PY+I + V D++G ++VG++GL+TPQI+ WDK Sbjct: 178 MPIVSANTYVDDGNGKPGANAFTPYLIQRRTVYDTEGRPYILNVGVIGLLTPQIVQWDKS 237 Query: 177 NLEGRVITKDIAETAAKFVPEMKAKGADVVIAMAHTGFDAAAVIGDGSENDINALSKVPG 236 NL+G+++T DI +TA KFVPEMKA GAD+++A+AH+G +A G EN L+KVPG Sbjct: 238 NLDGKIVTADIVDTARKFVPEMKAAGADIIVAVAHSGINAD--YQPGQENVATELTKVPG 295 Query: 237 IDAITFSHTHKVFPTNGDDTKLDASFKDPATKKPYDSAVAKIDNVNGHINDTPAVQAGYG 296 ID + H+H+ FP P + D NG IN P V AGY Sbjct: 296 IDVVLSGHSHQEFP------------------GPVYKTIPGADITNGTINGKPVVMAGYW 337 Query: 297 GGNLGLIDLKIVSDGSS--WKVDKAASKASTRSI-------AGVEVDPXXXXXXXXXXXX 347 G +LG++DL++ D S W + A K S R I + V DP Sbjct: 338 GNDLGVVDLQLNYDRKSQTWTIQNA--KTSLRPIWDKTAKKSLVTPDPAIARAVKAAHEG 395 Query: 348 TIEYVNQPLGTTIAPMNSYFALVQDDPTVQIVTYAQQQYVSNLVNTDAALA--KYKNLPI 405 T+ YV + AP+ SY+ALVQDDP+VQ+V+ AQ YV AALA +YK+LP+ Sbjct: 396 TLRYVRGKVADLAAPVTSYWALVQDDPSVQLVSNAQTAYVK------AALASTQYKDLPV 449 Query: 406 LSVGAPFKAG-RNGPEEYTEIKAGDLTIASASDLYLYDNTLKAIVVKGSTVKEWVEMSAG 464 LS APFKAG R G YT+I AG L I + +DLY+Y NT++A++V G+ V+EW+E +AG Sbjct: 450 LSAAAPFKAGGRGGVSYYTDIPAGTLAIKNVADLYVYPNTVQAVLVTGAQVQEWLERAAG 509 Query: 465 AFNRIKPAISTPQPLLNSAFAVYNFDVIDGIQYTIDVTKNAKYKPDGTVNDASSSRVTSI 524 F +I P+ + PQ L++ +F YNFD++DG+ Y IDVT+ ++Y DG V + + R+ ++ Sbjct: 510 QFKQIDPSKTEPQALVDDSFPTYNFDILDGVTYEIDVTQPSRYGSDGKVANEGAHRIKNL 569 Query: 525 TYGNEPLNPEQDFIVVTNNYRASGGGNFPDVKGAQMIIDSQMENRQVLMDYISAAGTVNP 584 YG +P++P F+V TNNYRASGGG FP + G +I+ + E RQ L+ Y TVNP Sbjct: 570 MYGGKPIDPAAQFVVATNNYRASGGGKFPGLDGKNIILQAPDETRQALIAYFQDQKTVNP 629 Query: 585 TADNNWSIAPIQGNVNVTFTSSPKAAAVKPDNVTDTGNKDIKGFEIYNLNL 635 AD NW + PI G V ++ SSP P VT +D GF YNL Sbjct: 630 AADGNWKLTPIPG-VTLSVVSSPNGQKNLPAGVTYVQTRD-DGFAEYNLKF 678 >ref|NP_102177.1| probable multifunctional phosphoesterase [Mesorhizobium loti MAFF303099] dbj|BAB47963.1| probable multifunctional phosphoesterase [Mesorhizobium loti] Length = 659 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 264/624 (42%), Positives = 384/624 (61%), Gaps = 51/624 (8%) Query: 1 MSTTDVHTNVYGWDYFKNAVSASVGLDRTSTLVKEARTEQPNNLLLDNGDLIQGTPLGTY 60 M TTD+H NV +DY+ + + ++GL RT++L+ R E N++L+DNGDL+QG P+G Y Sbjct: 43 METTDIHVNVLPYDYYADKANDTMGLSRTASLIDAVRKEAVNSMLIDNGDLLQGNPMGDY 102 Query: 61 MAKESGFEESADQIHPLIAAMNVMKYDAATFGNHEFNYGLNYLDRTINGSPADKSNTDAD 120 +A E G ++ +HP++ MN++ Y+ +T GNHEFNYGL++LD+ + G A+ Sbjct: 103 IAYEKGLKDG--DLHPVMKGMNLLGYECSTLGNHEFNYGLSFLDKVLAG---------AN 151 Query: 121 FPYVNANIY-------NVSDGKNTFEPYVIIPKKVTDSQGNEVTIDVGLLGLVTPQIMDW 173 FP+V AN+ N D K +PYVI+ +K+ D G E I +G++G V PQIM W Sbjct: 152 FPFVCANLIRGTELAANPRDDKLYLKPYVILDRKIKDGSGAEQPIRIGIIGFVPPQIMVW 211 Query: 174 DKVNLEGRVITKDIAETAAKFVPEMKAKGADVVIAMAHTGFDAAAVIGDGSENDINALSK 233 D NLEG V T+DI E A +VP+MK +GAD+VIA++H+G D GD EN ++ Sbjct: 212 DLKNLEGNVKTRDIVEAATAWVPQMKEEGADIVIALSHSGIDVKQ--GDMMENASFFVAG 269 Query: 234 VPGIDAITFSHTHKVFPTNGDDTKLDASFKDPATKKPYDSAVAKIDNVNGHINDTPAVQA 293 V GIDA+ H H VFP D L+ +D G + PAV Sbjct: 270 VDGIDAVFTGHQHLVFPGKKDFQSLEG-----------------VDTQKGTLQGKPAVMG 312 Query: 294 GYGGGNLGLIDLKIVSDGSSWKVDKAASKAS-------TRSIAGVEVDPXXXXXXXXXXX 346 G+ G ++GLIDL + DGS WKV A S+A ++ V D Sbjct: 313 GFWGSHMGLIDLMLERDGSKWKVVSATSEARPIFERVDNKAKPTVSDDKRIIAALEQDHQ 372 Query: 347 XTIEYVNQPLGTTIAPMNSYFALVQDDPTVQIVTYAQQQYVSNLVNTDAALAKYKNLPIL 406 T+ YV +P+G T AP+ SYFALV DDP+VQ+V+ AQ Y+ +++ + ++K++P+L Sbjct: 373 ATLAYVRRPVGKTSAPLYSYFALVADDPSVQVVSQAQTWYLKDILKS----TQWKDVPLL 428 Query: 407 SVGAPFKAG-RNGPEEYTEIKAGDLTIASASDLYLYDNTLKAIVVKGSTVKEWVEMSAGA 465 S APFKAG RNG + YT++ AGD+ I + +DLYLY NT++A+ + G+ VKEW+EMSAG Sbjct: 429 SAAAPFKAGGRNGADYYTDVPAGDIAIKNVADLYLYPNTVRAVEITGAQVKEWLEMSAGI 488 Query: 466 FNRIKPAISTPQPLLNSAFAVYNFDVIDGIQYTIDVTKNAKYKPDGTVNDASSSRVTSIT 525 FNRI+ A Q L+N+ F YNFDVIDG+ Y ID+++ KY G V +A ++R+ + Sbjct: 489 FNRIE-AGKADQALINTDFPSYNFDVIDGVSYKIDLSQPPKYDAKGGVANAGANRIVDLM 547 Query: 526 YGNEPLNPEQDFIVVTNNYRASGGGNFPDVKGAQMIIDSQMENRQVLMDYISAAGTVNPT 585 +G +P++P Q F+V TNNYRA GGGNFPD+ +++I ++ NR V++ YI + GT+NP+ Sbjct: 548 FGGKPIDPNQKFVVATNNYRAGGGGNFPDINASKIIYEAPDTNRDVIVRYIVSQGTINPS 607 Query: 586 ADNNWSIAPIQGNVNVTFTSSPKA 609 AD NWS P+ G +V F + KA Sbjct: 608 ADGNWSFGPLPGT-SVVFETGVKA 630 >ref|NP_759710.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio vulnificus CMCP6] gb|AAO09237.1| 2`,3`-cyclic-nucleotide 2`-phosphodiesterase [Vibrio vulnificus CMCP6] Length = 653 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 288/658 (43%), Positives = 386/658 (58%), Gaps = 58/658 (8%) Query: 1 MSTTDVHTNVYGWDYFKNAVSASVGLDRTSTLVKEARTEQPNNLLLDNGDLIQGTPLGTY 60 + TTD+HTNV +DY+K+ S +GL R +TLVK+AR E N++L+DNGDLIQG+P+G Y Sbjct: 33 IETTDIHTNVMDYDYYKDKPSQQIGLTRAATLVKQARGEVVNSVLVDNGDLIQGSPMGDY 92 Query: 61 MAKESGFEESADQIHPLIAAMNVMKYDAATFGNHEFNYGLNYLDRTINGSPADKSNTDAD 120 MA + A ++HP+ AMN + YD GNHEFNYGL +L TIN DAD Sbjct: 93 MAAKG---IKAGEVHPVYKAMNQLSYDVGNIGNHEFNYGLEFLAETIN---------DAD 140 Query: 121 FPYVNANIYNVSDGKNTFEPYVIIPKKVTDSQGNEVTIDVGLLGLVTPQIMDWDKVNLEG 180 FPYV+AN+++ GK+ F+PY+I D G E TI VG +G V PQIM WDK NLEG Sbjct: 141 FPYVSANVFDKKTGKHYFKPYIIKDHTFKDVNGEEHTIKVGYIGFVPPQIMVWDKKNLEG 200 Query: 181 RVITKDIAETAAKFVPEMKAKGADVVIAMAHTGFDAAAVIGDGSENDINALSKVPGIDAI 240 +V KDI ETA + VP+MK +GADV++A+ H+G ++ G+EN + LS+V GIDAI Sbjct: 201 KVFAKDIKETAEELVPQMKKEGADVIVAIPHSGV-SSDPYKIGAENSVYYLSEVDGIDAI 259 Query: 241 TFSHTHKVFPTNGDDTKLDASFKDPATKKPYDSAVAKIDNVNGHINDTPAVQAGYGGGNL 300 F H+H VFP G D + +DN G IN AV G G ++ Sbjct: 260 AFGHSHAVFPGKGFDN------------------IQGVDNQAGTINGVAAVMPGRWGSHV 301 Query: 301 GLIDLKIVSDGSSWKVDKAASKA-----STRSIAGVEVDPXXXXXXXXXXXXTIEYVNQP 355 G+IDL++ W V K ++A T V+ D T E+VNQP Sbjct: 302 GIIDLELQQKQGKWTVVKGQTEARPIFDKTTKKPLVDADAAMVKALEADHKGTREFVNQP 361 Query: 356 LGTTIAPMNSYFALVQDDPTVQIVTYAQQQYVSNLVNTDAALAKYKNLPILSVGAPFKAG 415 +G M S+ ALVQDDPTVQIV AQ+ YV + D LA LP+LS APFKAG Sbjct: 362 IGKANDVMYSFLALVQDDPTVQIVNLAQKDYVERFIQGDPDLA---GLPVLSAAAPFKAG 418 Query: 416 --RNGPEEYTEIKAGDLTIASASDLYLYDNTLKAIVVKGSTVKEWVEMSAGAFNRIKPAI 473 +N P +TE+++G LT +A+DLYLY NTL A+ V G VKEW+E SAG F +I + Sbjct: 419 GRKNDPANFTEVESGQLTFRNAADLYLYPNTLVAMKVTGHEVKEWLECSAGQFKQIDVSS 478 Query: 474 STPQPLLN-SAFAVYNFDVIDGIQYTIDVTKNAKYKPDGTVNDASSSRVTSITYGNEPLN 532 + PQ L++ F YNFDVIDG+ Y IDVTK AKY D V +A S RV +TY +P++ Sbjct: 479 TAPQSLIDWDGFRTYNFDVIDGVNYQIDVTKPAKYDGDCKVINADSERVIGLTYQGKPID 538 Query: 533 PEQDFIVVTNNYRASGGGNFPDVKGAQMIIDSQMENRQVLMDYISAA----GTVNPTADN 588 +Q FI+ TNNYRA FP + DS ENR V+ +YIS G V P+ADN Sbjct: 539 VKQTFIIATNNYRAY-SNKFPGTGSEFVAFDSPDENRTVVANYISRVSQEKGEVTPSADN 597 Query: 589 NWSIAPIQGN--VNVTFTSSPKAAAVKPDNVTDTGNKDIK-------GFEIYNLNLKQ 637 NW+ API+ + +++ F +SP A + + + G +K GF +Y L+L++ Sbjct: 598 NWTFAPIKSDKALDIRFETSPSDKAAQ--FIKEKGIYPMKQIATDDVGFAVYQLDLQK 653 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 25/156 (16%) Query: 640 PAPTGDVEVHLLGINDFHGQ-LDTTSYVGSDAVGTAATLAAYL-KNTRSQYANSLLFHNG 697 PA +++ ++ D H +D Y + T AA L K R + NS+L NG Sbjct: 22 PAMAETIKLRIIETTDIHTNVMDYDYYKDKPSQQIGLTRAATLVKQARGEVVNSVLVDNG 81 Query: 698 DSVGAS-----APVSSLERDE--PTMEWMNLMKFDVGSLGNHEFDQGVESMKTQIYGGKD 750 D + S ++ E P + MN + +DVG++GNHEF+ G+E + Sbjct: 82 DLIQGSPMGDYMAAKGIKAGEVHPVYKAMNQLSYDVGNIGNHEFNYGLEFLA-------- 133 Query: 751 PKTINNTSIVHKGADFDYINANAIDSSTGVPIINPY 786 +TIN+ ADF Y++AN D TG PY Sbjct: 134 -ETIND-------ADFPYVSANVFDKKTGKHYFKPY 161 >ref|NP_354227.1| AGR_C_2233p [Agrobacterium tumefaciens] ref|NP_531905.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C97507 hypothetical protein AGR_C_2233 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AG2725 2',3'-cyclic-nucleotide 2'-phosphodiesterase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK87012.1| AGR_C_2233p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL42221.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 662 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 277/654 (42%), Positives = 392/654 (59%), Gaps = 55/654 (8%) Query: 1 MSTTDVHTNVYGWDYFKNAVSASVGLDRTSTLVKEARTEQPNNLLLDNGDLIQGTPLGTY 60 M TTD+H +V+ +DY+ + + ++GL RT++++ + R E N++L+DNGD +QG PLG Y Sbjct: 45 METTDIHVHVFPYDYYADKPNDTMGLSRTASIIDKIRAEAGNSMLVDNGDFLQGNPLGDY 104 Query: 61 MAKESGFEESADQIHPLIAAMNVMKYDAATFGNHEFNYGLNYLDRTINGSPADKSNTDAD 120 +A E G + A HP+I AMNV+ YD T GNHEFNYGL+Y+ T+ G A Sbjct: 105 IAYERGMK--AGDKHPVINAMNVLGYDCGTLGNHEFNYGLDYMSNTLAG---------AG 153 Query: 121 FPYVNANIYN---VSDGKNT---FEPYVIIPKKVTDSQGNEVTIDVGLLGLVTPQIMDWD 174 FPYV AN+ SD KN F+PYVI+ K++ D G + VG++G V PQIM WD Sbjct: 154 FPYVCANLTKGQLASDPKNDELFFKPYVILEKQIRDGGGVTSPVKVGIIGFVPPQIMMWD 213 Query: 175 KVNLEGRVITKDIAETAAKFVPEMKAKGADVVIAMAHTGFDAAAVIGDGSENDINALSKV 234 NLEG+ T+DI E A +VP MK +GAD++IA++H+G D + EN L+ V Sbjct: 214 SKNLEGKAQTRDIVEAAKAWVPVMKEEGADIIIALSHSGIDGKGQT-ERMENASLYLAAV 272 Query: 235 PGIDAITFSHTHKVFPTNGDDTKLDASFKDPATKKPYDSAVAKIDNVNGHINDTPAVQAG 294 GIDAI H H VFP K +D + D V G + PAV AG Sbjct: 273 EGIDAIFTGHQHLVFPG----------------PKTWD-GIEGADAVKGTLMGKPAVMAG 315 Query: 295 YGGGNLGLIDLKIVSDGSSWKVDKAASKA--------STRSIAGVEVDPXXXXXXXXXXX 346 + G ++GLIDL + DG SWK+ S+A S + +A P Sbjct: 316 FWGSHMGLIDLLLEKDGKSWKIVDFTSEARPIYHRDDSRKVVADFTDKPEVLAAAKTDHE 375 Query: 347 XTIEYVNQPLGTTIAPMNSYFALVQDDPTVQIVTYAQQQYVSNLVNTDAALAKYKNLPIL 406 + YV +P+G T AP+ SYFALV DDP+VQIV+ AQ Y+ +++ +YK+LP+L Sbjct: 376 AALAYVRRPVGKTSAPLYSYFALVADDPSVQIVSNAQTWYIKDMLKE----GQYKDLPVL 431 Query: 407 SVGAPFKAG-RNGPEEYTEIKAGDLTIASASDLYLYDNTLKAIVVKGSTVKEWVEMSAGA 465 S APFK+G R G + YT++ AGD+ I + +DLYLY NT++A+++ G+ VK W+EMSAG Sbjct: 432 SAAAPFKSGGRGGADYYTDVPAGDIAIKNVADLYLYPNTVQAVLINGAQVKNWLEMSAGM 491 Query: 466 FNRIKPAISTPQPLLNSAFAVYNFDVIDGIQYTIDVTKNAKYKPDGTVNDASSSRVTSIT 525 FN ++ A + PLLN+ F YNFDVIDG+ Y ID++K AK+ DG + S+R+ ++ Sbjct: 492 FNTVE-AGAKDAPLLNADFPSYNFDVIDGVTYQIDISKPAKFDKDGKAVNPDSNRIVNLQ 550 Query: 526 YGNEPLNPEQDFIVVTNNYRASGGGNFPDVKGAQMIIDSQMENRQVLMDYISAAGTVNPT 585 + +P++PEQ F+V TNNYRASGGG FPD+ G ++I + NR V++ YI GT+NP+ Sbjct: 551 FNGKPIDPEQKFVVATNNYRASGGGKFPDIAGDKVIFVAPDTNRDVIVRYIIDQGTINPS 610 Query: 586 ADNNWSIAPIQGNVNVTFTSSPK----AAAVKPDNVTDTGNKDIKGFEIYNLNL 635 AD NWS AP+ N F + PK AA +K + D G+ +GF + L L Sbjct: 611 ADANWSFAPV-ANTTAIFETGPKGRHYAAEIKGAKIEDAGDG-AEGFAKFRLVL 662 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,978,667,610 Number of extensions: 85378451 Number of successful extensions: 164751 Number of sequences better than 1.0e-05: 525 Number of HSP's gapped: 162839 Number of HSP's successfully gapped: 811 Length of query: 1395 Length of database: 757,237,578 Length adjustment: 138 Effective length of query: 1257 Effective length of database: 382,553,916 Effective search space: 480870272412 Effective search space used: 480870272412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)