BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0031.p
         (56 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_691805.1| hypothetical protein OB0884 [Oceanobacillus ihe...    81   8e-15
ref|NP_976657.1| conserved domain protein [Bacillus cereus ATCC ...    73   2e-12
ref|NP_654232.1| hypothetical protein predicted by GeneMark [Bac...    73   2e-12
ref|NP_641570.1| conserved hypothetical protein [Xanthomonas axo...    66   3e-10
gb|EAH14954.1| unknown [environmental sequence]                        66   3e-10

>ref|NP_691805.1| hypothetical protein OB0884 [Oceanobacillus iheyensis HTE831]
 dbj|BAC12840.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 59

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 48/55 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPERKRRE 55
          M  KK+FPLRIDPEL++ L++WA +EFRSVN H+E+LLRE+ KRAGRLP+++ ++
Sbjct: 1  MPKKKNFPLRIDPELYDILQKWAQDEFRSVNSHVEFLLRESTKRAGRLPKKQDKK 55


>ref|NP_976657.1| conserved domain protein [Bacillus cereus ATCC 10987]
 gb|AAS39265.1| conserved domain protein [Bacillus cereus ATCC 10987]
          Length = 54

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLRE 40
          MA KKSFPLRIDPELH  +E+WA +EFRSVN HIEYLLRE
Sbjct: 1  MAKKKSFPLRIDPELHAVIEKWANDEFRSVNAHIEYLLRE 40


>ref|NP_654232.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_830174.1| hypothetical protein [Bacillus cereus ATCC 14579]
 ref|NP_842850.1| conserved domain protein [Bacillus anthracis str. Ames]
 gb|AAP07375.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP24336.1| conserved domain protein [Bacillus anthracis str. Ames]
          Length = 54

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLRE 40
          MA KKSFPLRIDPELH  +E+WA +EFRSVN HIEYLLRE
Sbjct: 1  MAKKKSFPLRIDPELHAVIEKWANDEFRSVNAHIEYLLRE 40


>ref|NP_641570.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
          str. 306]
 gb|AAM36106.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 60

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 42/50 (84%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPE 50
          M+ KK++PLRI+ ++  A++RWA +E RS+N  IEY+LR+AL++AGRLP+
Sbjct: 1  MSEKKAYPLRINADVLAAVQRWADDELRSLNAQIEYVLRDALRKAGRLPK 50


>gb|EAH14954.1| unknown [environmental sequence]
          Length = 59

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 42/52 (80%)

Query: 1  MAAKKSFPLRIDPELHEALERWAGEEFRSVNGHIEYLLREALKRAGRLPERK 52
          M+ KK++PLRI+ E+  A +RWA +E RS+N  IEY+LR+AL++AGRLP+ K
Sbjct: 1  MSEKKAYPLRINAEVLAAAQRWADDELRSLNAQIEYVLRDALRKAGRLPKPK 52


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 80,022,055
Number of extensions: 2198637
Number of successful extensions: 6229
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6229
Number of HSP's successfully gapped: 19
Length of query: 56
Length of database: 757,237,578
Length adjustment: 28
Effective length of query: 28
Effective length of database: 681,214,806
Effective search space: 19074014568
Effective search space used: 19074014568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)