BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0020.p (425 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060214.1| COG2876: 3-deoxy-D-arabino-heptulosonate 7-ph... 351 2e-95 ref|NP_622664.1| 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DA... 348 2e-94 ref|ZP_00036160.1| COG2876: 3-deoxy-D-arabino-heptulosonate 7-ph... 344 2e-93 ref|NP_347528.1| DAHP synthase related protein [Clostridium acet... 343 6e-93 ref|NP_561610.1| carboxysome formation protein [Clostridium perf... 338 2e-91 >ref|ZP_00060214.1| COG2876: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Clostridium thermocellum ATCC 27405] Length = 343 Score = 351 bits (901), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/320 (52%), Positives = 232/320 (72%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 M+++ + + +NE+ V+ GL VH+S+G++ T+IG++G L M GVE Sbjct: 3 MVIVMKPNSTENDINEVAKVLTSLGLGVHISKGSERTIIGVIGDKRKLSDVPLELMNGVE 62 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 ++ I +SYKLAS+ F PE ++ID+ GVKIGG+ +V+M GPCAVES EQI A+ VK + Sbjct: 63 KLIPIVESYKLASKTFKPEPSIIDVGGVKIGGKEIVVMAGPCAVESREQIMAAAQAVKKA 122 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G Q LRGGAFKPRT PYSFQG+ EGL ++ EA + GLL ITEV + ++I + D+ Sbjct: 123 GAQFLRGGAFKPRTSPYSFQGLEEEGLKLLKEAKEATGLLIITEVTSERAIEIADSYVDM 182 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 QVG RN+QNF LLR++G +PVLLKRG S T DE LNAAEYI++ GN +V+LCERGIR Sbjct: 183 FQVGARNVQNFQLLREIGRSKKPVLLKRGPSTTIDEWLNAAEYIMSEGNYNVVLCERGIR 242 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFET TRNTLD+SA+PV+++LSHLP+I DPSH G+ + + P++KA++AAGA+GLI+E+H Sbjct: 243 TFETATRNTLDISAVPVVKSLSHLPIIVDPSHAAGKAQYILPLSKAAIAAGADGLIVEVH 302 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 +P +++ D Q L PE F Sbjct: 303 PNPKCALS-DAAQQLPPEDF 321 >ref|NP_622664.1| 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Thermoanaerobacter tengcongensis] gb|AAM24268.1| 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Thermoanaerobacter tengcongensis] Length = 338 Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 179/320 (55%), Positives = 235/320 (73%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 M+++ + ++Q++EI ++ GL H+SRG + VIG++G + + M+GVE Sbjct: 1 MVIVMNIDASEKQISEITNLLTSLGLGYHISRGEEKIVIGVIGDKRKLDGKAIEMMEGVE 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 V+ I YKLASR F PE T++ + ++IGG+N+VIM GPCAVES EQ+ E A VK + Sbjct: 61 KVIPIVDPYKLASRIFKPEPTIVKVGDIEIGGKNIVIMAGPCAVESREQLFESAMAVKRA 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G LRGGA+KPRT PYSFQG+ EGL M++EA + GL +TEVM V+ AE+AD+ Sbjct: 121 GAHFLRGGAYKPRTSPYSFQGLEEEGLKMLSEARELTGLKIVTEVMDVHSVEKVAEYADV 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 LQ+G RNMQNF LL+ +G +PVLLKRG +AT +E L+AAEYIL GN+DV+LCERGIR Sbjct: 181 LQIGARNMQNFSLLKAVGRMNKPVLLKRGLAATLEEWLSAAEYILNEGNKDVILCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDLSA+P ++ LSHLP+I DPSHGTGR LV MAKA+VAAGA+GLIIE+H Sbjct: 241 TFETYTRNTLDLSAVPAIKKLSHLPIIVDPSHGTGRWHLVPSMAKAAVAAGADGLIIEVH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 DP N+++ DG QSL P+ F Sbjct: 301 PDPKNALS-DGPQSLTPDNF 319 >ref|ZP_00036160.1| COG2876: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Enterococcus faecium] Length = 346 Score = 344 bits (883), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/321 (52%), Positives = 222/321 (69%), Gaps = 1/321 (0%) Query: 3 KKGSYHMIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLR 62 KK MIVI + +EQ+ +++ IEKEG +V + +G + VIGL G Sbjct: 1 KKAGKTMIVIMKKEATEEQIKKVVDHIEKEGFKVSIDQGTERVVIGLKGDTRSLQEGAFT 60 Query: 63 QMKGVENVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIA 122 + +GVEN V+I +YKL SR+FHP +TV+D+ GVKIG + V M GPC++E +QI E A Sbjct: 61 RYEGVENAVRILNTYKLTSREFHPGNTVVDVDGVKIGDGSFVTMAGPCSIEGLDQIRECA 120 Query: 123 RLVKASGGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDIC 182 R+ KA G ++LRGGAFKPRT PY+FQG+ EGL + +A G+ ITEVM ++D+ Sbjct: 121 RMAKAGGAKILRGGAFKPRTSPYAFQGLEEEGLKYIRQAADEFGMKVITEVMDEGHIDMV 180 Query: 183 AEHADILQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVML 242 AE++DILQ+G RNMQNF LL +G G+PV LKRG S T +E LNAAEYI V+ Sbjct: 181 AEYSDILQIGARNMQNFKLLSAVGKTGKPVGLKRGISGTINEWLNAAEYIAVEDKSPVIF 240 Query: 243 CERGIRTFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANG 302 ERGIRT+ET TRNT DLSA+P+++ L+H PVI DPSHGTG ELV PMA+A VA+GA+G Sbjct: 241 IERGIRTYETATRNTFDLSAVPLMKKLTHFPVIVDPSHGTGIWELVPPMARAGVASGADG 300 Query: 303 LIIEMHTDPDNSMTGDGVQSL 323 +I+E+H DP N+ + DG QSL Sbjct: 301 MIVEIHPDPANAWS-DGPQSL 320 >ref|NP_347528.1| DAHP synthase related protein [Clostridium acetobutylicum] pir||A97010 dAHP synthase related protein [imported] - Clostridium acetobutylicum gb|AAK78868.1| DAHP synthase related protein [Clostridium acetobutylicum] Length = 337 Score = 343 bits (879), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 231/320 (72%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 M++I T + ++ +I IE +G + +S G D+ V+G++G + E ++ + V+ Sbjct: 1 MVIIFKQNTEKSEIEKIKRAIEGDGCETTVSHGKDYIVVGVIGDTSKVNIERIQANENVD 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 VV++ + YK A R FHP+DT++D+ G KIGG+ L ++ GPC+VES EQI EIA+ VK S Sbjct: 61 KVVRVQEPYKKAGRHFHPQDTIVDVDGSKIGGKRLAVIAGPCSVESEEQIVEIAKRVKQS 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G LRGGAFKPRT PYSFQG+ +EGL ++ A K GL +TE+M+ +++D E D+ Sbjct: 121 GANFLRGGAFKPRTSPYSFQGLELEGLDLLKLAKKETGLPIVTEIMSADFIDRFVEDVDV 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 +QVG RNMQNF LL++LG + +LLKRG SAT +E L AAEYI++ GN +V+LCERGIR Sbjct: 181 IQVGARNMQNFTLLKELGKTRKTILLKRGLSATIEEFLMAAEYIMSEGNENVVLCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDLS +P ++ LSHLPVI DPSH G +VEP+AKA+VA GA+GL+IE+H Sbjct: 241 TFETYTRNTLDLSVVPAIKKLSHLPVIIDPSHAAGMWWMVEPLAKAAVAVGADGLMIEVH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 DP N+ + DG QS+ P++F Sbjct: 301 NDPANAKS-DGQQSIKPDKF 319 >ref|NP_561610.1| carboxysome formation protein [Clostridium perfringens] dbj|BAB80400.1| carboxysome formation protein [Clostridium perfringens str. 13] Length = 337 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 167/320 (52%), Positives = 234/320 (73%), Gaps = 1/320 (0%) Query: 9 MIVITSNQTPQEQVNEIIAVIEKEGLQVHLSRGADHTVIGLVGGVTPKLAEHLRQMKGVE 68 MIVI T +E++ ++I IE G++ G++ VIGLVG + + K VE Sbjct: 1 MIVILKPGTKEEEILKLIKKIESLGVETQRISGSEMCVIGLVGDTSKIDPAKVEANKNVE 60 Query: 69 NVVKISKSYKLASRDFHPEDTVIDIRGVKIGGENLVIMGGPCAVESPEQIDEIARLVKAS 128 ++ + + +K A+R FHP++++ID+ G KIG + + ++ GPC+VES EQI EIA+ VKA Sbjct: 61 RIMPVQEPFKKANRLFHPDNSIIDVLGNKIGDKKIALIAGPCSVESEEQITEIAKEVKAL 120 Query: 129 GGQVLRGGAFKPRTGPYSFQGVGVEGLTMMAEAGKRHGLLTITEVMTPEYVDICAEHADI 188 G LRGGAFKPRT PYSFQG+ +EGL ++ +A ++ GL +TE+M+ ++ E D+ Sbjct: 121 GASFLRGGAFKPRTSPYSFQGLELEGLELLKKAKEKTGLPIVTEIMSTSMIEKFIEEVDV 180 Query: 189 LQVGTRNMQNFDLLRKLGTCGRPVLLKRGFSATYDELLNAAEYILAGGNRDVMLCERGIR 248 +QVG RNMQNFDLL++LG +P+LLKRG SAT +EL+ +AEYI+AGGN +V+LCERGIR Sbjct: 181 IQVGARNMQNFDLLKELGKTKKPILLKRGLSATIEELIMSAEYIMAGGNENVILCERGIR 240 Query: 249 TFETYTRNTLDLSAIPVLQNLSHLPVISDPSHGTGRRELVEPMAKASVAAGANGLIIEMH 308 TFETYTRNTLDLSAIP ++ LSHLPVI DPSH G+ +VEP++KA++A GA+GLIIE+H Sbjct: 241 TFETYTRNTLDLSAIPAIKKLSHLPVIVDPSHAAGKSWMVEPLSKAAIAVGADGLIIEVH 300 Query: 309 TDPDNSMTGDGVQSLFPEQF 328 DP N++ DG QS+ PE++ Sbjct: 301 NDPANALC-DGQQSIKPEEY 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 604,137,592 Number of extensions: 24668605 Number of successful extensions: 60150 Number of sequences better than 1.0e-05: 535 Number of HSP's gapped: 59688 Number of HSP's successfully gapped: 536 Length of query: 425 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 297 Effective length of database: 409,704,906 Effective search space: 121682357082 Effective search space used: 121682357082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)