BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0013.p
         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF21818.1| multiple resistance and pH regulation related pro...    72   4e-12
ref|NP_242179.1| Na+/H+ antiporter [Bacillus halodurans] >gi|253...    65   3e-10
ref|ZP_00097531.1| COG1320: Multisubunit Na+/H+ antiporter, MnhG...    65   5e-10
ref|NP_391044.1| similar to hypothetical proteins [Bacillus subt...    65   7e-10
ref|NP_694025.1| Na(+):H(+) antiporter [Oceanobacillus iheyensis...    65   7e-10

>gb|AAF21818.1| multiple resistance and pH regulation related protein G [Bacillus
           firmus]
          Length = 119

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
           ++   FLFF+        KLL+ I+FVF+T+PVAG + GR+AYR GVPLW+ S QDDLK 
Sbjct: 50  IMLATFLFFFLVHGEFVGKLLLTILFVFLTAPVAGMMMGRSAYRVGVPLWEKSTQDDLKK 109

Query: 61  VLEKN 65
           + EK 
Sbjct: 110 MYEKK 114


>ref|NP_242179.1| Na+/H+ antiporter [Bacillus halodurans]
 pir||A83814 Na+/H+ antiporter BH1313 [imported] - Bacillus halodurans  (strain
           C-125)
 dbj|BAB05032.1| Na+/H+ antiporter [Bacillus halodurans]
          Length = 117

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
           ++   FL+F     +   K+L  I+FVF+T+PVAG +  R+AYR GVPLW  SVQDDLK 
Sbjct: 50  IMVATFLYFLLIEGLFVGKILFTILFVFLTAPVAGLMISRSAYRIGVPLWDQSVQDDLKK 109

Query: 61  VLEKNK 66
           V  K +
Sbjct: 110 VYAKKR 115


>ref|ZP_00097531.1| COG1320: Multisubunit Na+/H+ antiporter, MnhG subunit
           [Desulfitobacterium hafniense]
          Length = 101

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 38/48 (79%)

Query: 17  SIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKPVLEK 64
           SIKL + I FVF+TSPV+ H+  R+AYR+ VPL K SV+DDLK VLEK
Sbjct: 53  SIKLFLGIFFVFLTSPVSSHVICRSAYRAQVPLAKASVRDDLKEVLEK 100


>ref|NP_391044.1| similar to hypothetical proteins [Bacillus subtilis]
 pir||E70008 conserved hypothetical protein yufB - Bacillus subtilis
 emb|CAB07906.1| unknown [Bacillus subtilis]
 emb|CAB15154.1| mrpG [Bacillus subtilis subsp. subtilis str. 168]
          Length = 124

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
           +L G F + +F    +S K+L+ I+F+FITSP+ GHL  RAAY SGV L + SVQDD   
Sbjct: 51  ILLGVFFYLWFVTGELSAKILLGILFIFITSPIGGHLICRAAYNSGVKLDERSVQDDYNG 110

Query: 61  VLEKNKTKQDDS 72
           +      +++DS
Sbjct: 111 IRNFVIKRKEDS 122


>ref|NP_694025.1| Na(+):H(+) antiporter [Oceanobacillus iheyensis HTE831]
 dbj|BAC15059.1| Na(+):H(+) antiporter [Oceanobacillus iheyensis HTE831]
          Length = 154

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 1   VLTGAFLFFYFYIEVVSIKLLIAIVFVFITSPVAGHLNGRAAYRSGVPLWKGSVQDDLKP 60
            L GAF++F       S++LL+ I FVF+T+PVAGHL  RAAYR+ V +   +++D+L+ 
Sbjct: 53  TLLGAFIYFASEQGFYSVRLLLGIAFVFLTAPVAGHLITRAAYRASVKMADTTIEDELRD 112

Query: 61  VLE--KNKTKQD 70
           V++  + +TK++
Sbjct: 113 VIKEVQEETKEE 124


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 107,216,749
Number of extensions: 3527053
Number of successful extensions: 12857
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 12857
Number of HSP's successfully gapped: 9
Length of query: 73
Length of database: 757,237,578
Length adjustment: 44
Effective length of query: 29
Effective length of database: 637,773,222
Effective search space: 18495423438
Effective search space used: 18495423438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)