BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0007.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243614.1| NAD(P)H oxidoreductase [Bacillus halodurans] >g... 273 1e-72 ref|NP_981388.1| NAD(P)H dehydrogenase, quinone family [Bacillus... 218 9e-56 ref|NP_653423.1| NADHdh_2, NAD(P)H dehydrogenase (quinone) [Baci... 216 3e-55 ref|NP_834629.1| NAD(P)H dehydrogenase [quinone] [Bacillus cereu... 213 2e-54 ref|NP_346665.1| Putative NADPH-quinone reductase, YabF family [... 191 1e-47 >ref|NP_243614.1| NAD(P)H oxidoreductase [Bacillus halodurans] pir||D83993 NAD(P)H oxidoreductase BH2748 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06467.1| NAD(P)H oxidoreductase [Bacillus halodurans] Length = 198 Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/194 (67%), Positives = 153/194 (78%), Gaps = 1/194 (0%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 M HL++YAHP+ ES NHAI++T V ALKK GHEV+VRDLYAL FQPVL PED + M +G Sbjct: 1 MNHLIIYAHPHPESLNHAILDTAVHALKKNGHEVIVRDLYALHFQPVLTPEDISVMNAGD 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETG-VDKLLT 132 P DI TEQ++I ADV+TFIYPIWWTGLPAILKGY+DRVFSYGFAY GE G V ++LT Sbjct: 61 IPQDIKTEQEYITRADVITFIYPIWWTGLPAILKGYIDRVFSYGFAYEIGENGEVIRMLT 120 Query: 133 GKKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALD 192 GKKG IINT G PKE YD+IGMT GLKITSD+GIF F G+E +HLLFGS+ S + A Sbjct: 121 GKKGLIINTFGHPKENYDEIGMTNGLKITSDTGIFEFVGVEPTDHLLFGSVGSLNEEAYK 180 Query: 193 EILVQVEETVTSLF 206 +L +VEE V S+F Sbjct: 181 GMLKEVEERVHSIF 194 >ref|NP_981388.1| NAD(P)H dehydrogenase, quinone family [Bacillus cereus ATCC 10987] gb|AAS43996.1| NAD(P)H dehydrogenase, quinone family [Bacillus cereus ATCC 10987] Length = 193 Score = 218 bits (554), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 111/193 (57%), Positives = 140/193 (72%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 MKH++VYAHPN ESFNHAI+ET + L++KGHEV VRDLY L+F PVL D + G Sbjct: 1 MKHVIVYAHPNTESFNHAILETVKKELEEKGHEVRVRDLYELNFNPVLGASDFISFSQGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 TPADI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL+G Sbjct: 61 TPADIKEEQEHISWADSITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLLSG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + + Sbjct: 121 KKGLLLSTMGNTKEAYTAGGMFEAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVRKQ 180 Query: 194 ILVQVEETVTSLF 206 L +V++ V F Sbjct: 181 YLEEVKDVVNRAF 193 >ref|NP_653423.1| NADHdh_2, NAD(P)H dehydrogenase (quinone) [Bacillus anthracis A2012] ref|NP_847374.1| NAD(P)H dehydrogenase, quinone family [Bacillus anthracis str. Ames] gb|AAP28860.1| NAD(P)H dehydrogenase, quinone family [Bacillus anthracis str. Ames] Length = 193 Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 110/193 (56%), Positives = 139/193 (72%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 MKH++VYAHPN ESFNHAI+ET L++KGHEV VRDLY L+F PVL + + G Sbjct: 1 MKHVIVYAHPNTESFNHAILETVKSELEEKGHEVRVRDLYELNFNPVLGASNFISFSQGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 TPADI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL+G Sbjct: 61 TPADIKEEQEHISWADTITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLLSG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + + Sbjct: 121 KKGLLLSTMGNTKEAYTAGGMFDAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVRKQ 180 Query: 194 ILVQVEETVTSLF 206 L +V++ V F Sbjct: 181 YLEEVKDVVNRAF 193 >ref|NP_834629.1| NAD(P)H dehydrogenase [quinone] [Bacillus cereus ATCC 14579] gb|AAP11830.1| NAD(P)H dehydrogenase [quinone] [Bacillus cereus ATCC 14579] Length = 193 Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/193 (56%), Positives = 137/193 (70%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 MKH++VYAHPN ESFNHAI+ET L+ KGHEV VRDLY L+F PVL D + G Sbjct: 1 MKHVIVYAHPNTESFNHAILETVKSELEGKGHEVRVRDLYELNFNPVLGASDFISFSQGN 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 TP DI EQ+ I+ AD +TFIYP+WW GLPAILKGYVDRVFS+GFAYAYGE G++KLL+G Sbjct: 61 TPEDIKEEQEHISWADSITFIYPVWWAGLPAILKGYVDRVFSHGFAYAYGENGIEKLLSG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KKG +++T G KE Y GM +K T+D GIF FTGIE +EH + S+PS + + Sbjct: 121 KKGLLLSTMGNTKEAYTAGGMFDAMKKTADVGIFEFTGIETIEHTFYTSVPSVDDSVRKQ 180 Query: 194 ILVQVEETVTSLF 206 L +V++ V F Sbjct: 181 YLEEVKDVVNRAF 193 >ref|NP_346665.1| Putative NADPH-quinone reductase, YabF family [Clostridium acetobutylicum] pir||B96902 probable NADPH-quinone reductase, YabF family [imported] - Clostridium acetobutylicum gb|AAK78005.1| Putative NADPH-quinone reductase, YabF family [Clostridium acetobutylicum] Length = 200 Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/189 (47%), Positives = 118/189 (62%) Query: 14 MKHLVVYAHPNAESFNHAIMETTVQALKKKGHEVVVRDLYALDFQPVLKPEDTAAMRSGQ 73 M +L+V+AHPN SF I++ V+A ++ G V +RDLY L F P+LKP D + G+ Sbjct: 1 MNNLIVFAHPNPNSFGKGILDEVVKASEESGAAVRIRDLYQLGFDPILKPADFETFQRGE 60 Query: 74 TPADIVTEQKFIAEADVVTFIYPIWWTGLPAILKGYVDRVFSYGFAYAYGETGVDKLLTG 133 P DI EQ+ + A+++TFIYP+WW GLPA+LKGYVDRV+SYGFAY Y + LLTG Sbjct: 61 VPQDIKDEQENVKWANMITFIYPVWWAGLPAMLKGYVDRVYSYGFAYEYVDGQPRGLLTG 120 Query: 134 KKGFIINTHGTPKEIYDQIGMTAGLKITSDSGIFGFTGIEMVEHLLFGSIPSAGQAALDE 193 KK I T GTP ++Y GM +K T+D GIF F GIE V H FG++P + Sbjct: 121 KKALIFCTTGTPSDVYGANGMHNSMKQTTDEGIFKFCGIEEVRHNFFGAVPHVSDEIRKD 180 Query: 194 ILVQVEETV 202 L E V Sbjct: 181 YLRAASEIV 189 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 297,065,707 Number of extensions: 12177161 Number of successful extensions: 29448 Number of sequences better than 1.0e-05: 256 Number of HSP's gapped: 29184 Number of HSP's successfully gapped: 256 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)