BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0005.p (145 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00097527.1| COG1846: Transcriptional regulators [Desulfit... 108 5e-23 ref|NP_711081.1| Transcriptional regulator, marR family [Leptosp... 80 1e-14 ref|NP_602801.1| Transcriptional regulator, MarR family [Fusobac... 69 3e-11 ref|ZP_00143728.1| Transcriptional regulator, MarR family [Fusob... 69 4e-11 ref|NP_972323.1| transcriptional regulator, MarR family [Trepone... 61 8e-09 >ref|ZP_00097527.1| COG1846: Transcriptional regulators [Desulfitobacterium hafniense] Length = 144 Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 59/136 (43%), Positives = 84/136 (61%) Query: 10 NALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQP 69 N ++L+S+I A++ I++ELEKR I DI PSHG VL LF+ L++ E+A +V+ + Sbjct: 8 NTINLMSRINERANRFILAELEKREITDIAPSHGAVLAALFRDSELTMSEIAQRVNRDRS 67 Query: 70 TVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPG 129 TVT VNKL GY+ +K +DSR T + LT K L+PAF +IS L Y G++ Sbjct: 68 TVTNSVNKLIDSGYLATMKNAQDSRSTLVFLTPKGRELEPAFFQISQSLAMLEYQGISAE 127 Query: 130 QREDLEFLLEHIYRRF 145 +RE +LE IY F Sbjct: 128 EREIFRKVLERIYMNF 143 >ref|NP_711081.1| Transcriptional regulator, marR family [Leptospira interrogans serovar lai str. 56601] gb|AAN48099.1| Transcriptional regulator, marR family [Leptospira interrogans serovar lai str. 56601] gb|AAS71295.1| transcriptional regulator (MarR family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 151 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 78/130 (60%) Query: 14 LISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTV 73 LIS+IR E HK + EL+++ + + SH D+L L +++ ++++A ++ + T+T Sbjct: 9 LISRIRDEFHKHLNQELKEKNLSPLTTSHADILFALVKKNKAQMQDIAKMINRDKSTLTA 68 Query: 74 LVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQRED 133 LV+KLE LG V R K ED R+ ++LT K+ +++P IS L +Y G ++++ Sbjct: 69 LVDKLEVLGLVARTKDSEDQRIIHLELTPKADSVRPVLLGISRSLLGNLYRGFTENEKKE 128 Query: 134 LEFLLEHIYR 143 L LL +Y+ Sbjct: 129 LVRLLMKLYQ 138 >ref|NP_602801.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL94100.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 160 Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 74/132 (56%) Query: 14 LISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTV 73 LI+K++ + + + ++GI G +L +L+Q+D ++ KELA++ L + T+TV Sbjct: 8 LITKLKQLHSRSLAQCISEQGIDAFSGEQGKILFVLWQKDKVTQKELASETGLAKNTITV 67 Query: 74 LVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQRED 133 ++ K+E+ + RI D R + + LTD + +LK +ISD++ + +Y G + + + Sbjct: 68 MLEKMEKNNLIRRITDENDKRKSLVILTDHAKSLKKCSDKISDEMTKKMYEGFSEEEIDK 127 Query: 134 LEFLLEHIYRRF 145 E L I + F Sbjct: 128 FEEYLHRIIKNF 139 >ref|ZP_00143728.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24669.1| Transcriptional regulator, MarR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 160 Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 74/132 (56%) Query: 14 LISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTV 73 LI+K++ + + + ++GI G +L +L+Q+D ++ KELA++ L + T+TV Sbjct: 8 LITKLKQLHSRSLAQCISEQGIDAFSGEQGKILFILWQKDKVTQKELASETGLAKNTITV 67 Query: 74 LVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQRED 133 ++ K+E+ + RI D R + + LTD + +LK +ISD++ + +Y G + + + Sbjct: 68 MLEKMEKNDLIRRITDENDKRKSLVILTDYAKSLKKCSDKISDEMTKKMYRGFSEEEIDK 127 Query: 134 LEFLLEHIYRRF 145 E L I + F Sbjct: 128 FEEYLHRIIKNF 139 >ref|NP_972323.1| transcriptional regulator, MarR family [Treponema denticola ATCC 35405] gb|AAS12234.1| transcriptional regulator, MarR family [Treponema denticola ATCC 35405] Length = 145 Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 69/134 (51%) Query: 10 NALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQP 69 N L++KI+ ++ L ++ I + G +L +L+Q+DG+ I L+ K L Sbjct: 4 NGGFLVTKIKQLGDRIFEKILSEKNIDAFNGAQGRILYVLWQEDGIPIGSLSIKCGLAIT 63 Query: 70 TVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPG 129 ++T ++ ++E G + R++ D R + LT+K+ ALK + +SD++ Y G + Sbjct: 64 SLTTMLERMENQGLISRVQSETDKRKILLFLTEKAHALKDEYNSVSDEMGSIYYKGFSEE 123 Query: 130 QREDLEFLLEHIYR 143 + E L+ I + Sbjct: 124 EITRFEECLDRIRK 137 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 201,732,967 Number of extensions: 7436366 Number of successful extensions: 25959 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 26006 Number of HSP's successfully gapped: 30 Length of query: 145 Length of database: 757,237,578 Length adjustment: 105 Effective length of query: 40 Effective length of database: 472,152,183 Effective search space: 18886087320 Effective search space used: 18886087320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)